Lepeophtheirus salmonis (salmon louse): 121120640
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Entry
121120640 CDS
T08214
Symbol
Pms2
Name
(RefSeq) mismatch repair endonuclease PMS2 isoform X1
KO
K10858
DNA mismatch repair protein PMS2
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm03430
Mismatch repair
lsm03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
121120640 (Pms2)
03460 Fanconi anemia pathway
121120640 (Pms2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lsm03400
]
121120640 (Pms2)
DNA repair and recombination proteins [BR:
lsm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
121120640 (Pms2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_mis_repair
MutL_C
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
121120640
NCBI-ProteinID:
XP_040571444
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Position
6:38784344..38788514
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AA seq
816 aa
AA seq
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MANITPLDKGSVHRICSGQVVLSLGIGVKELVENALDAGAKRVEVGFYESGWDKITVSDD
GHGVEPQNYTGLALKHHTSKIRNFSDVAEVDTFGFRGEALSSLCALSKLTVITRTPDSKI
GVELSYDNSGKLVSTKNISRDKGTTVILEDLFYSLPVRRAEFKKHVKREFTKMLNVLTSY
ALISTGLSLYCWNMVKGKRTTVLQTHGRSEIKETLKDVFGSKSIKSLEEVNGEEGMIKIN
GYISSVKHGEGRNASDRQFLYLNHRPADLNKIRRRINETYKSYNRHQYPFLFLNIVTNKQ
KVDINVTPDKRQIFLENENSLIDFILQTLNQLFEDIPSIFDVTPLNQTLFKINEEEFPQN
EGLKRFLTNSDSDEPTKKQKIMNSFFSESVASNQEDVCLEVLHEKDQFEDKRSRLFNGIY
DNEEEKSVKIVHQNDLSEDRRTRPFNEISDNEDEFFIKSNHKDQSSNSRVLSFFKKHNLD
ETEEEDFIQNVEGRSSNGRIEMSPGITKNYYSPNASFTSKKNFTTPLVENTSFIVEDISA
ISSNSKTHENASRNSRCDIIIDDSSYDPSLRRVVKVNFDIAKVKSLRKLSSDSARLSYRK
FFAKICPEDNNSAEEELKKCIKKESFKSMKILGQFNLGFIICLLDFDIFIVDQHATDEKY
NFETLQNTCRLEPQNMVIPQVLELTYANENILSENIDIFNENGFEFDFNEEANVGSHYKL
KRVPMYRNWNFGKSDVEELIFMLTDFDRSCAKKLRPSKVRAMFASRSCRSSVMIGTALSY
RDMRRLIDHMSEMEHPWNCPHGRPTMRHLVNLNMIR
NT seq
2451 nt
NT seq
+upstream
nt +downstream
nt
atggccaacatcacacccttagataagggaagtgtgcataggatatgctcgggtcaagtt
gtcctatctttaggcattggtgtcaaagaactcgtggaaaacgctttagatgcaggagca
aaacgagtagaagtgggcttttatgagtctggatgggataaaatcactgtatctgatgat
gggcatggggttgagcctcaaaactatactggattagcgttaaaacatcacacctctaag
attcgaaattttagtgatgttgcagaggtggacacctttgggtttcgcggggaagccctc
agctcactttgtgctctgagtaagttaacggtcatcacacgaaccccagattctaagata
ggagtggaactctcctatgataattcaggaaaactagtttcaacaaagaatatatcccgt
gacaaaggaaccactgtgatattagaggatctcttttattcactccctgtcagacgagct
gaatttaaaaaacatgtcaagcgggagtttactaaaatgttgaatgtcttgacgagctat
gctctcatttctactgggctaagtctttactgttggaacatggtgaagggtaaaagaaca
acagtgcttcaaacacatgggcgaagtgaaataaaagaaacgcttaaagatgtatttgga
tctaaaagtattaagagccttgaagaagtaaatggagaagaaggaatgattaaaattaat
ggttatatatcatcagtcaaacatggggaaggacgcaatgcttcagatcgtcaattcctt
tatttaaatcatcgacccgctgatttgaataagattcgacgtcgtatcaacgaaacttac
aaatcctataaccgacatcaatacccatttttatttttaaacattgttacgaacaaacaa
aaagtcgacattaatgtcacaccggataaaaggcagatcttcttggaaaatgaaaactcc
ttgattgatttcattctgcaaaccctaaatcaattatttgaggatattccgtccatattt
gatgttacacccttaaatcaaactttatttaaaatcaatgaggaggaatttcctcagaat
gaaggactaaaacgatttctcacaaattctgactctgatgaaccaacgaaaaagcaaaag
ataatgaattcgtttttttctgaaagtgtggcttccaatcaagaggatgtctgtttggag
gtattgcatgaaaaagatcaatttgaagataaaagatctagactatttaatggaatttat
gataatgaggaggagaaatctgttaagatagtgcatcaaaatgatctatctgaagataga
agaactcgaccatttaatgaaatttctgataatgaagatgaattttttataaaatcaaat
cataaagatcaatcatctaatagtagagttctatcatttttcaagaaacacaatttagat
gagacagaagaagaagattttattcagaacgtcgaaggtaggagttcaaatggaagaatt
gaaatgtctccaggcattaccaaaaattattattctccaaatgcatcgtttacttcgaaa
aagaattttaccactccattagtagaaaatacttcttttattgttgaggacatttctgct
atttcttccaactcaaaaacacatgaaaatgcttctcgaaatagtagatgtgatataatc
atagatgatagtagttatgatccatctttgagacgagttgtgaaagtaaattttgacatt
gctaaagtcaagtctttaaggaaattgtcatcagatagcgcaaggttatcttatcgtaaa
ttttttgctaagatatgccctgaagacaataatagtgctgaagaagaattaaaaaaatgt
attaaaaaagaatcttttaagagcatgaagattttgggacagtttaatttaggattcata
atttgtttattagactttgatatttttattgtagatcaacatgccacagatgagaaatat
aattttgaaactcttcaaaatacttgtcgcttggaacctcagaatatggttatccctcaa
gttctcgagctcacatatgccaatgaaaatatactttcggaaaacatagacatattcaac
gaaaatggatttgaatttgatttcaatgaagaagcaaatgttggatcccattataagtta
aaaagagttcctatgtatagaaattggaatttcggaaaatcagatgtggaagaacttatt
tttatgctgactgattttgatcgatcttgtgcgaagaaactgcgcccatctaaagttaga
gctatgtttgcatctaggtcttgcagatctagtgttatgataggaacagctctatcatat
cgtgatatgcgtagacttattgatcacatgtcggaaatggagcatccttggaactgtcct
catggtcggcctactatgagacacttggttaatttgaatatgattcggtaa
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