Lepeophtheirus salmonis (salmon louse): 121121062
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Entry
121121062 CDS
T08214
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
121121062
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsm03021
]
121121062
03036 Chromosome and associated proteins [BR:
lsm03036
]
121121062
Transcription machinery [BR:
lsm03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
121121062
Coactivators
SAGA/TFTC/STAGA complex
121121062
Chromosome and associated proteins [BR:
lsm03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
121121062
STAGA complex
121121062
TFTC complex
121121062
SAGA complex
121121062
SLIK complex
121121062
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
TFIID_NTD2
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_EML
WDR55
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
Beta-prop_SCAP
Beta-prop_WDR75_1st
Beta-prop_HPS5
ANAPC4_WD40
Beta-prop_TEP1_C
Beta-prop_IFT140_1st
NBCH_WD40
Beta-prop_DCAF4
WDR90_beta-prop_4th
Beta-prop_WDR19_1st
Beta-prop_SPT8
Beta-prop_DCAF12
WD40_RFWD3
PEP5_VPS11_N
WD40_like
RMC1_N
Beta-prop_Vps41
Beta-prop_WDR35_TULP_N
eIF2A
Nbas_N
Motif
Other DBs
NCBI-GeneID:
121121062
NCBI-ProteinID:
XP_040571861
LinkDB
All DBs
Position
6:complement(17226232..17229724)
Genome browser
AA seq
621 aa
AA seq
DB search
MSLKSRSGVLSSSTPTPEVVESAILRYQAKRRLSPASPVVWKQSLDELALSEMLLGEASD
NEAPLFSPFPAQPDPVTSETQYGKFKAWISESPEALKPELAQLLYPMFTHLYLDLISSGQ
HPSSSKFLRRHQSTFLGNAEFNAFIRLLSSINSPRDLSLNDHVNAFRSSKYTVTLSTQTY
NYLIKYVHQGKSSLLLRLLQSKIDLKLADPLAACSRPEALQRIRSEMNRDLLQQSINDKN
TTNNDIQRLKEIIQSVRSGPSPLPSTCLYRINNVPSPLASAELSYDSSLMALGSENSSIY
LYNLLPSTTRVKREDNHARIKLSCDFFGDNEDDVRSGGESKERTVPELLLGHSGPVYDLK
FLNNKDYLLSVSEDTSMRLWETSTGANKVVYSGHSYPVWCVDVDRLGYNIVTGSMDRTAK
LWNTEYTFPIRIYAGHEKDVDCIAFHPNCNYFATGSVDKSIRLWSHADAKMVRVLTGHKS
GVYSLAFSPDGKYLASGGEDRRIRIWDLASSRQLKELKGHTDTVYSLVWSTNSSHLSSGG
LDGVLRIWDMNNPSPQNSSTSSSSSEESGTPTTSSSSKNISCSPVPELIGTYKTNCSNIL
DLRYSHHNTLLVTAIMEEPKT
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgtccctcaagtcaaggagtggagtgttgtcctcctcaactccaaccccagaggtggtg
gagtctgcaattcttcggtaccaagcgaagcgtcgtttgtctcctgcgagtcctgtggtt
tggaagcaaagcctggatgaattggctctgtccgaaatgctcctgggagaagcctctgac
aatgaggctcctcttttcagtccctttccagcccagcctgaccctgtgacaagtgagaca
cagtatgggaaattcaaagcttggatttctgagagtcccgaggctctgaaacctgaatta
gctcaattgctctatcccatgttcactcatctgtacttggacctaatttcctccggacag
cacccctcttcttccaagttcctccggcgccatcagtccacattccttgggaacgcagag
ttcaatgcctttatccgtcttctgtcctccatcaattctccgcgagatctgtccctcaac
gatcatgtgaatgcctttcgttcctccaaatacacagtcactctgagtacgcagacctac
aactatctcatcaaatatgtacatcaaggcaaatcctcgcttcttctacgtctccttcag
tccaaaattgatttaaaattagcagatcccctcgctgcctgctcaagacctgaagcctta
caacgaattcgatccgaaatgaaccgggatcttctccaacaaagtataaatgacaagaat
actaccaacaatgatattcaaagactcaaggaaatcattcaaagtgtacgctccggcccc
tctcctctaccctctacgtgtttatatcgtattaacaacgttcctagtccattggcttct
gctgagttgtcatatgactcgtctctcatggctcttgggtctgaaaattcatccatttac
ctatacaatcttcttccatcgacaaccagggtcaaacgagaggataatcatgcaagaatc
aaattatcttgtgatttctttggtgataacgaggatgacgtgagaagtggaggtgaatca
aaagagagaacagtacctgagttattacttggtcatagtggtcctgtatatgacttgaaa
tttcttaataataaggactatttactctctgtatcagaggatacaagtatgcgtctttgg
gaaacttccactggcgccaataaggtagtttattccgggcacagctatcctgtgtggtgt
gtagatgttgatcgattaggttataatattgtgactggatctatggatcgaacagccaaa
ttatggaatactgagtacacatttcccatcagaatatatgctggacacgaaaaagacgtg
gactgcattgcatttcaccctaattgcaactactttgctaccggaagtgtggacaaatct
attcgcttatggtcacatgctgatgctaaaatggtgcgcgttttaacgggacacaagagt
ggagtatattctcttgccttttcccctgatggtaaatatttagcttctgggggagaggat
cgacgcattcgcatatgggatctggcctcttctcgtcaattaaaagagttgaaaggacac
acagacacagtgtactctctcgtatggagtactaactcatcacatctttcctcaggaggt
ctcgatggtgtattgagaatttgggacatgaacaatccttcacctcagaactcatcaact
tcttcctcctcatctgaagagtctgggacgccaactacatcctcgtcttccaaaaatatt
agttgtagtcctgtgccggaactcatcggaacctataaaacaaattgttccaacatttta
gatctcagatattcgcatcataatacccttctagttacagccattatggaagaaccaaaa
acttga
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