Lepeophtheirus salmonis (salmon louse): 121121124
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Entry
121121124 CDS
T08214
Symbol
Ddx56
Name
(RefSeq) probable ATP-dependent RNA helicase DDX56 isoform X2
KO
K14810
ATP-dependent RNA helicase DDX56/DBP9 [EC:
5.6.2.7
]
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lsm03009
]
121121124 (Ddx56)
Enzymes [BR:
lsm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121121124 (Ddx56)
Ribosome biogenesis [BR:
lsm03009
]
Eukaryotic type
Pre-60S particles
Helicases
121121124 (Ddx56)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Phage_YunG-like
Motif
Other DBs
NCBI-GeneID:
121121124
NCBI-ProteinID:
XP_040571943
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All DBs
Position
6:1704733..1708264
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AA seq
532 aa
AA seq
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MGSTDFNSMGLDDRLLESVAELGWSEPTLIQSRAVPLILEGKDLLARGRTGSGKTGAFAL
PVLQRLLLGESTGSVRALFLAPSRELVQQIHGVVRSLLSHCGRSISIGNLSMGENLEAGR
ALLKTPPDLLVSTPGRLWSHIQAKDIDLSSSLEILVIDEADLTFSFGYESDLKGILINLP
SIYQSVLTSATLSEDVNKLKKLVLHNPVILQLEEPQLAEASQLAQYLIKIEEEDKFLLIY
ALFKLRLIQGKTIIFVNNVDRCYKIKLFLEQFGIPVCVLNSELPAASRCHIVTQFNKGIY
DIIVASDENFLLCSNPNDKDKGKRKKDTESGISRGIDFQFVSNVINFDFPLDVDSYIHRV
GRTARGNNTGTALSMIAVKEMLRLEEIEEELKEKMYTESSVFRPYQFKLEELNGFRYRTR
DAWRGVTKIAIREARLKELKQEILKSTELRAHFEDNPRDAQILRHDKSLFTVKHQVHMKN
VPDYIIPKALKNIVPTGNRRSHAKRKISSAKRRYETAKSDPLLSMYHSKKKC
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
atgggttccacggattttaattccatgggattggatgatcggcttttggagtcagttgca
gaactgggttggtcggagccaacgctgattcaatcccgtgcagttccacttattcttgaa
gggaaggatttgttagcccgtggtagaacgggatccggaaagacaggagcatttgctttg
cctgtattacagcgactcttgcttggagaaagtactggatctgtccgtgctcttttttta
gccccaagtagagaattggttcaacaaatccacggtgtggttcgaagtctcctctcccat
tgtggaagaagtatatcaataggaaatcttagtatgggtgaaaaccttgaagcgggtcgt
gccctactaaaaactccaccagatctcctcgtatccactcccggaaggctttggtcacac
attcaagctaaagatattgatttaagctcctctttggagatccttgttattgatgaagcg
gatttgactttttcatttggatatgagtccgatctgaaaggaatcctcattaatttacct
tccatttatcagtctgtactaacgagtgcaaccttgagtgaagatgtcaataagctcaaa
aaattagttcttcataatccagttatattgcaattagaagagccacagttagcagaggct
agtcaacttgctcaatatttgattaaaatcgaagaggaagacaagtttctcctaatatat
gccttattcaaactacgactcattcaagggaagaccattatatttgtgaataatgttgat
agatgttataaaatcaaactgtttctggagcaatttggtatccctgtctgcgtattaaac
tctgaacttcctgcagcctccagatgtcatatcgtgacacagttcaataaaggaatttat
gatattattgtggcttccgatgaaaattttctgctttgcagtaatcctaacgataaggat
aaagggaaaagaaaaaaagatacggaatcggggatatccagaggaattgactttcaattc
gtctctaacgttatcaatttcgactttcccttggatgtagacagttatattcatagagtt
ggtcgtactgctagaggtaataacactggaacagcactttctatgattgcagtgaaggaa
atgctaaggctcgaggaaattgaggaagagcttaaggagaaaatgtatacggagagctcc
gtgttcagaccataccaattcaaattggaagaactgaatgggtttagatataggacacgt
gacgcatggcgaggtgtaacaaaaattgcgattcgagaggctcgacttaaggaattaaaa
caagagattttaaagtcaactgaactgcgtgctcactttgaagacaatccaagagatgct
caaattttgagacatgataaatccctcttcacagtaaaacatcaagtacatatgaaaaac
gttccagactacataatccctaaggctctcaagaacatagtacccacagggaatcgaaga
tcccacgcaaaaaggaaaatatcaagtgcgaagaggagatacgaaaccgcaaagtcggat
cctttgctttctatgtatcactccaaaaaaaaatgttaa
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