Lepeophtheirus salmonis (salmon louse): 121121203
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Entry
121121203 CDS
T08214
Name
(RefSeq) SWI/SNF complex subunit SMARCC2
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
121121203
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsm03021
]
121121203
03036 Chromosome and associated proteins [BR:
lsm03036
]
121121203
Transcription machinery [BR:
lsm03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
121121203
Chromosome and associated proteins [BR:
lsm03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
121121203
PBAF complex
121121203
GBAF(ncBAF) complex
121121203
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM
SWIRM-assoc_1
SWIRM-assoc_3
Myb_DNA-binding
Myb_DNA-bind_6
SpeFL
Motif
Other DBs
NCBI-GeneID:
121121203
NCBI-ProteinID:
XP_040572012
LinkDB
All DBs
Position
7:9349322..9354650
Genome browser
AA seq
1019 aa
AA seq
DB search
MSTEPKKTGGPILKFWESPETISALEPVKSWLLKFGKKIVASDPPTAKSLAALVPQAVQF
QDDNFGKEKEPGVKILRLPARLFFDFSSGGPLCRILLTMFKVKADAGWRRFDLQSPSRRE
ANLAMFLKIEDVLIDEGFFSIPALLLRKDVPKDEVSKVKEVAAKRHYDLVDQEKDATHII
YPAVDADPEVYCRPILRRGEKCIIHFYCFPESRDNWGVLYPPEDKDPPENPEQRESRYRV
NSKWVTDMEEFNEMMCEEDYLVNEKGLLVPHPLSLSYDDFSNCEEKPKKKPKRKRSPSPV
QTPRKKISKGSSVKGSKKSRTADDDDDEEEDLTADMDDPSPENAITEVKITTMNASRADL
QVNKGGTYMEVGTDDMSNSEGTASSRDGAIKTETIAEDNVTEQTHHIIVPSYSSWFDYNA
IHSIEKRALPEFFNAKNKSKTPEIYLSYRNFMIDTYRLNPTEYLTSTACRRNLAGDVCAI
MRVHAFLEQWGLINYQVDIDSRPTLMGPPPTSHFHILADTPAGLQPINPPKTTQPSAART
LLDIDGKKVGAFGGSENGVKKEVGGDFGLKTDLYDKRNAAVKKASAATASRDWTDQETLL
LLEALEMFKDDWNKVCEHVGSRTQDECILHFLRLPIEDPYLENPEVGGGAMGPMAYQPMP
FSSAGNPIMSTVAFLASVVDPRVAAAGAKSAMEEFARIKDEVPSVIMDSHIKNIQEAKDD
GSETPEGSALEKSGIAGTEAEDPSRDEPEKKKVPEESSTSTNGDVEKNDNKDDESKDDTK
DESSEEPEVKKEDTSSEANSTEKKTPPKPEETAKDRLIKDGQLQSAAAAALSSAAVKAKH
LAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREREALEYQRQQLIQERQQFH
LEQLRAAEFRARTAAQQQLNRESGQQQQQQQQQVQQVQQVQQQVQQVQQQQQVQQQPPPP
PQQQQQHMLQQQQMPPQQQMPPQQQQMPPQQVVNHSPHSVHPNVPQPNMQQSMVNPTPQ
NT seq
3060 nt
NT seq
+upstream
nt +downstream
nt
atgtctacggaacccaagaagactgggggcccaattctcaagttttgggaatctccagaa
acgatctcagctttggagcctgtcaagagctggctgcttaagttcggtaagaagattgtg
gcgagtgatcctccaactgccaagtcccttgcggctctcgtgcctcaggctgttcaattc
caagatgataatttcgggaaggagaaagagcctggagtgaagatattgcgactccctgcg
cgcctcttcttcgacttcagctctggcggtcctctgtgccgcattttactgaccatgttc
aaggtgaaggcggatgctggctggaggcggttcgatctccagtctccatcgcgcagggag
gccaacttggccatgttcctcaagattgaggatgttttgattgacgagggattcttcagc
attcccgcactgctgctcagaaaggatgtccccaaggacgaagtctccaaagtcaaggaa
gtggccgccaagagacactacgaccttgtggaccaggaaaaagatgcgacccacatcatt
tatcccgcagtggatgcggatccagaagtgtactgccgtcccattctgaggagaggagag
aaatgcatcattcatttctattgcttccctgagtccagagataattggggcgtgctctat
ccccccgaagataaagatccacctgaaaatccagagcaaagagagtctcgctatagagtc
aactccaagtgggttacagatatggaggagtttaatgaaatgatgtgtgaagaggattat
ttggtcaacgagaaaggccttctagtaccgcatcccctttctctgtcttatgatgatttc
tctaattgtgaggaaaaaccaaaaaagaagcccaagcgtaagcgatctccttctcccgtt
caaactccaaggaaaaaaatctcaaaaggaagtagcgtgaaaggatccaagaaatctaga
actgcagatgatgacgatgatgaagaagaggatttaactgccgatatggatgatccttct
ccagaaaacgccatcactgaggttaagatcaccaccatgaatgcgagtagagctgatctt
caagtgaataaaggaggaacctacatggaagtgggtacggatgatatgagtaattctgaa
ggaaccgctagctcacgcgatggtgccatcaaaactgaaacaattgctgaagataatgtt
actgagcagacccatcacatcatcgtcccttcttatagttcatggtttgattataatgcc
attcattctattgagaagagagcgcttcctgaatttttcaatgctaaaaacaaaagcaaa
actcctgaaatttacttgtcataccgtaacttcatgattgatacataccgcttaaatcca
actgaatatctcacatccactgcttgccgtagaaacttagcaggcgatgtttgtgctatt
atgagggtacatgcatttctggaacaatggggtttgatcaattatcaggttgacattgac
tcgaggcctacactaatggggcctccacccacatcacattttcatatattagctgatact
cctgctggtcttcaacccatcaaccctcctaaaacaactcaaccatcagcagctcgtaca
ttgcttgatattgatggaaagaaagttggtgcgtttgggggatctgaaaatggcgttaaa
aaggaagtcggtggcgattttggtctcaaaaccgacctatatgataaaagaaatgccgct
gttaaaaaagcatcagctgcaactgcttctagagattggacggatcaagaaacactttta
ttattggaggctcttgagatgttcaaagatgattggaacaaggtctgtgagcatgttggc
tcaagaactcaagatgagtgtattttgcatttccttcgtcttccgattgaagatccttac
ttagaaaatcctgaggttggaggtggtgcaatgggacccatggcttatcaacctatgcca
tttagtagtgcagggaaccccattatgtcaactgtcgcatttttagcttcagttgtggat
ccaagagttgcagctgctggagctaaatctgcaatggaggagtttgctagaattaaagac
gaggtaccctcagtgattatggattcacatattaagaatattcaagaagcaaaggatgat
ggaagtgaaactccagaaggttcggctcttgaaaaatctggaattgcagggactgaagct
gaagatccttcaagggatgaacccgaaaagaaaaaggtccctgaggagtcgtctacttcc
acaaacggagatgtggagaagaacgacaacaaagacgatgagtctaaagatgacacaaaa
gacgaatcatctgaagagcctgaagttaaaaaagaagacacctcaagcgaagccaattca
acggaaaagaagacacctcctaaacctgaagaaactgctaaagataggttaatcaaggat
ggacaacttcaaagtgcagcggccgccgctctatcctcagctgctgtaaaagctaaacat
ttggctgcagttgaagaaagaaaaatcaaatctttggttgctcttttagtagaaacgcaa
atgaaaaagttagaaatcaaattaaggcattttgaagaacttgaaactatcatggaccgt
gaaagagaggctctggaatatcaacgccaacaattaatccaagaacgacaacaattccat
ttggaacagttacgtgcagcagaattccgagcacggactgcggctcagcaacagttgaat
agagagagtggtcaacaacagcaacagcagcaacaacaggtgcagcaggtacaacaagtc
cagcagcaggtacaacaagtccagcagcagcaacaagtgcaacaacaaccaccaccacca
ccacaacaacaacaacaacacatgctacagcagcaacagatgcctcctcaacaacaaatg
ccgcctcaacagcaacaaatgccaccacagcaagttgtcaaccactcaccgcactcagta
catcctaacgttccccagcctaacatgcaacaaagtatggttaatccaacaccgcaataa
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