Lepeophtheirus salmonis (salmon louse): 121121294
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Entry
121121294 CDS
T08214
Name
(RefSeq) nuclear pore complex protein Nup93
KO
K14309
nuclear pore complex protein Nup93
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121121294
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsm03019
]
121121294
Messenger RNA biogenesis [BR:
lsm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
121121294
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nic96
Nup84_Nup100
Vps39_1
Motif
Other DBs
NCBI-GeneID:
121121294
NCBI-ProteinID:
XP_040572118
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Position
7:23151816..23154547
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AA seq
806 aa
AA seq
DB search
MAGNLNDLLQAAEQLTTEIEDSSELPRVKRNLKQLVEAGQQLYSKTNRETSQQEHLKASI
LLGSKGIDLPSISNKLEALSNIGSSGFESIEPLRVTDIAGFLRNERENAILSLIEETRQE
TLNNGDRLHWESLASEWESDKQRILNALLVGGSDLADITSGMKPEIQTRVHDPVSPTSLD
ATEMKYAKKIEEYNVLVSSGSVKPSLVHKFLSIYPEEEDQEICVLWSMVSAMMFPSTKLV
PRAEMSKAIVSKAKRYLESAFKKFMTITVFSNLRKAELGGTPSTLNTVRSYLNVRLPDSP
GLEDGLVDGVPIWPLIYFCLRCGDLEAAIKAATSAGHGLGEMTKLLSEASNSSDRRLSPQ
SENIVRLSYRRSLRQSTDPYKRAVYCMLGACDHSDEHAEIATSLDDYLWIKLSMIREDEA
DSGLTLSQFQILMVEEYGESHFSAFDQPLLYFQVLFLTGQFESAIEFLFRVDRLRAHSVH
IALSMFENNQLLLPSNIQAPLLSRESSDKKPIKRLNLARCIILFVRKFEFSDPKEALHYF
YFLRSMKGAKGDNLFTSCVSELVLKSLEFDRLLGVINSDGSRSTGLIDKFSQHIDTQKII
ENVASDSEHKGMFEDSVKLYDLAKKHEKVIELLNKLLSQVVSQSPVAESRRDRLQRKAVD
IAKRYRANGHTASRETIATFFLLLDLMTFFDLYHMKKYDDAIDAVLNIKVVPLNQSDIDF
MVSNFRLTSDEVRRNLPDLLLAVMNILFSQYKQTKSKGRGNEGGRERNLETLRNRAKSLI
TFAGIIPYRMPGDTNARLVQMEVLMN
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atggcgggtaatctgaatgatcttctccaagctgccgagcaactcacaacagagatagag
gattccagtgagttgcctcgtgtgaaaagaaatctgaagcaactcgtggaagccggacaa
cagctttattcgaaaaccaaccgcgagacctcccaacaggagcatctcaaggcttccatt
cttcttgggtccaagggaattgatcttccttccatatctaacaaattagaggctctctct
aatattggatccagtggattcgagtcgattgagcctcttcgtgtgacggatattgcaggt
tttttacgaaatgagcgagaaaacgcgattctatctctgatcgaagaaacgaggcaggaa
actctgaataatggagatcgtcttcattgggagtccctagcttcggaatgggaatctgat
aagcagcgcattctgaatgctcttcttgttggtggctctgatttagcggatataacatct
gggatgaagcccgaaatacagactcgagtgcacgatcccgtctcgccaacctccttggat
gccacggaaatgaaatatgcaaagaaaatagaagaatacaatgtattagtatcttctgga
agtgttaaaccctcattagttcacaagttcctttccatttatccggaagaggaggatcag
gaaatatgtgtgctatggtccatggtttcagccatgatgtttccttccactaaattagtt
cccagagctgaaatgtccaaggctattgtgtccaaagccaaacgctatcttgaaagcgca
ttcaaaaaatttatgacgattaccgtattctctaatttgcgaaaagcggagttaggaggt
actccaagtactcttaataccgtaagaagttacctaaatgtacgtctacccgattcccct
ggattagaagacggtcttgtagatggtgttcctatttggccactcatctacttctgctta
cgatgtggagatctcgaagctgcaattaaagcagccacatctgccggccatggattaggt
gaaatgactaaattgttgtctgaagcctccaattcctctgatcgtcgtttatctcctcaa
tctgaaaatatagttaggctatcatatcggaggtctcttagacagtctaccgacccctac
aaaagagctgtttattgtatgctaggcgcttgtgatcactctgatgaacatgctgaaatt
gctacttctttggatgattatctttggataaaattatcaatgatacgggaagatgaagca
gactcgggcttaactttgagtcagttccaaatcttgatggtggaggaatatggggaatca
catttttctgcgtttgaccagccacttctttacttccaagtcttatttctgactggtcag
tttgagtctgctatcgagtttcttttccgtgttgaccgacttagggctcatagcgttcat
attgctctatccatgttcgaaaacaaccaattacttttaccatctaatattcaagctcca
cttttaagtcgagagagctctgataaaaaacccattaaaagattaaatctggcacgatgt
ataatcttatttgtacgaaagttcgaattttctgatccaaaagaggcccttcactatttt
tatttcctcagatctatgaaaggagcaaaaggtgataatttatttacatcttgtgttagt
gaacttgttttaaaatctctggaatttgatcgtcttctgggggtaataaattctgatgga
agtcgatccactggattgattgataaattctcgcaacatattgatactcaaaagataatt
gaaaatgtagcctctgattcggaacacaaagggatgttcgaagatagtgttaagttatac
gacttagcaaagaaacatgaaaaagtaattgaacttctaaacaagctattgtcacaagtt
gtttcgcagtctccggtagctgaatctcgtagagatcgtcttcaaagaaaagctgttgat
attgctaaacgatatagagcaaatggacatacagcatcaagagaaacgattgcaactttc
tttcttcttctagatctaatgacattttttgatttataccatatgaagaaatacgatgac
gcaattgatgcagttttaaacattaaggttgttccacttaatcagtcagatattgatttc
atggtttccaattttcgtcttacatcagatgaggttcgtcggaatttgccagatctgtta
ttggctgttatgaatatactattcagtcaatataaacaaacaaaatccaagggtcgtgga
aatgaaggaggacgcgaaagaaacttggagaccctgaggaatcgtgcaaaatccctcatc
acttttgctggcattattccttatagaatgcctggtgatacaaatgcacgtttggttcaa
atggaggttttaatgaattag
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