Lepeophtheirus salmonis (salmon louse): 121121343
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Entry
121121343 CDS
T08214
Name
(RefSeq) patched domain-containing protein 3 isoform X1
KO
K12385
Niemann-Pick C1 protein
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm03265
Virion - Ebolavirus, Lyssavirus and Morbillivirus
lsm04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
121121343
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
121121343
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
lsm02000
]
121121343
Transporters [BR:
lsm02000
]
Solute carrier family (SLC)
SLC65: NPC-type cholesterol transporter
121121343
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sterol-sensing
Patched
MMPL
Curto_V2
TMEM100
Motif
Other DBs
NCBI-GeneID:
121121343
NCBI-ProteinID:
XP_040572166
LinkDB
All DBs
Position
7:27296585..27303631
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AA seq
926 aa
AA seq
DB search
MHHSPPLQQNKIVRTTVSQHQLLEYRPVYVANFLGRFRLITVQKVLGFTVATYPWWTILV
SSIICLSTMTGLIWFHQTTDYEVLWAPDNTNALQNKLWIEKNYPKDSRLEYIILEAPNVL
TKENIIYLFKIDQKLRNVVSSTYNKTYADLCYRTPQKCVSQSILQIWANKESIPDEDIIM
GLDSNTIFKDVTKAWNEGSLGLDLLINEPEWNDNGKTIIGAKGFLSIWLMKNNASDYVEG
DLPRDWVAEDWEKNLIKFLTDGTDHQPNLENASNDAMVYSFTERSFQDEIVTSIDGGMYV
FGVGFLLILIYSLLVTSDFHPVNQRVMLLLLGFMVIGMAIGSSFGLGFHIGIIYADLHPI
IPFLLLGIGVDDLFIIIKSTDNLSQKEKELPLKERIALVVQHSGVSITVTSLTDLVAFLI
SSTTSIPLLRAFCLSVALGISFLYFFVVTFFIAWYTLDERRIEEGKAFLWFTKRVHSVPP
KKSTWTHNLYKKYYVEYLFAIPSQLILGGISLLVFGFGIFGTFNIQQDYDPITYMRQNSY
QVKFIEAKNRLYPEFGDIVDIYVGNIPYWENIQEMKQIDSLVNNCQYVRTGSHSLYWFKH
VIDVCESEGFNCSTEFDFKKAIVFSLVLKPFIFADLKLNITILEEFQDFQDLKWHIQSSK
STFQYGHLESISVQTKAMDEIILGLEKIIFEDSDFVSPISRSLAFHQWTANKVISKELIR
NMSLNFACITIVLFMLLANIQLSLIVLFTVAMTITEIAGFAYFVGLNIEIVTSLELILSV
GLVLDYSAHIGVCYTIQKTGSRRERSQRALLDMGPAIFSGGFSTFLAFVVLFFNDSYIFT
SFCHMLGFGVLFGLWNALVFMPLLLSYFGPLTEEELKTVSPTPSVGRVNMAFPCSNSDIA
PPMEEKKKHFVEVISSDGSNEYVAKF
NT seq
2781 nt
NT seq
+upstream
nt +downstream
nt
atgcatcattcacctccactccagcagaacaaaattgttcgaaccactgtttcacaacat
caacttttagagtatcggcccgtatacgtagcaaattttcttggtcgctttcggctcatt
actgtccaaaaagtacttggattcactgtagcaacatacccatggtggactattttggta
tctagtataatatgtctttccactatgacaggtttaatttggtttcatcaaaccacagac
tatgaagttctatgggcccctgacaataccaacgcccttcaaaataaactttggattgag
aaaaactacccaaaggactcaaggttggagtatattattcttgaggctccaaatgtttta
acaaaggagaatattatttacctcttcaagattgatcaaaaacttcgaaatgtggtttcc
tcaacgtataataaaacatatgctgatctatgttatcgcacccctcagaaatgtgtctct
caaagtatacttcagatttgggctaataaggaaagcataccagatgaagacataataatg
gggttagatagcaataccatattcaaggatgtgacaaaggcttggaacgagggttcttta
ggtttggatttactcatcaatgagccagaatggaatgataatggtaaaacaattattggt
gcaaaagggtttctctcaatttggctcatgaaaaacaatgcttcagactatgttgagggt
gatttaccaagggattgggttgcagaagattgggagaaaaatttaattaagtttttaaca
gatggaacagatcatcaacctaacctggaaaatgcttcaaacgacgccatggtctactct
tttacagagagaagctttcaagatgaaattgttacatcaattgatggtggaatgtatgta
tttggagtaggatttcttctcatccttatatactcgttgttagtaacctctgacttccac
cctgtcaatcaacgagtcatgttacttctccttggttttatggtgattggaatggcaata
ggctcttcatttggtcttggctttcatattggaatcatttacgcagatctccaccccatc
ataccctttctactcttgggtattggtgtagacgacctcttcatcatcatcaagtcaaca
gataatctaagtcaaaaagaaaaggagttacctctaaaagaacgaattgcacttgttgta
cagcatagtggggtgtcaataacagtcacatctctaactgatcttgtggcttttttaatt
agttctacaacgtccattcctttattgagagcattttgtctctctgtggctctcgggata
tcttttctctatttttttgttgtcacattttttatagcctggtataccttggatgaacgt
cgaattgaggaagggaaggcttttctatggtttaccaaacgtgtacacagtgttccccca
aaaaaatcaacatggactcataatttgtataaaaagtattatgtggaatatctttttgcg
ataccaagtcaattgattcttggaggaataagtttgttggtatttggttttgggatcttt
ggtacattcaatattcaacaagactatgatcctataacctacatgagacaaaattcttac
caagttaaatttatagaggccaagaatcgactttatccagagtttggtgatattgttgat
atatatgtaggaaatattccatattgggagaatatacaagaaatgaaacaaattgatagt
cttgtcaacaattgtcaatatgttcgcacaggatctcattccctttattggtttaaacat
gtcattgatgtctgtgaaagtgaaggcttcaattgctcaacagagtttgattttaaaaag
gccattgtgttttccctagtacttaagccattcatttttgctgatttaaaacttaatata
actattttggaagaatttcaagattttcaagatttaaagtggcatattcaatcttcaaaa
agtacctttcaatatggtcatttagagagtatttctgtacagactaaagcaatggatgaa
attattctgggtctggaaaaaattatttttgaggattcagattttgtttcgccgatttct
cgatccctggcattccatcaatggacagcaaacaaggtcatatccaaggaattgattcgg
aacatgagtttaaactttgcctgcatcacaattgttctttttatgcttttggcaaacatt
caactaagtcttattgttctatttactgttgcaatgaccattacagagattgctggtttc
gcctattttgtggggttaaatattgaaatagtcacatccctggaattaattctcagtgta
ggattagttcttgattactcagctcacataggtgtatgctataccattcaaaagactggt
tcgcgaagagaaagaagtcaaagagccttgcttgacatgggcccagctatatttagtgga
gggttttcaaccttccttgcctttgtcgtactgttcttcaatgattcttacatttttaca
tcattctgtcatatgttgggctttggagttcttttcggattatggaatgcattagttttt
atgccacttcttcttagctactttgggcctctgacggaagaagaactaaaaacggtatct
cctactccttccgtaggaagagtcaacatggcattcccttgcagtaactctgatatagct
cctcctatggaggaaaaaaagaaacatttcgttgaagtaatttcctctgacggatctaat
gaatatgttgccaaattttaa
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