Lepeophtheirus salmonis (salmon louse): 121121455
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Entry
121121455 CDS
T08214
Name
(RefSeq) DIS3-like exonuclease 1
KO
K18681
DIS3-like exonuclease 1 [EC:3.1.13.-]
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121121455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsm03019
]
121121455
Messenger RNA biogenesis [BR:
lsm03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
121121455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_Dis3
Rrp44_CSD1
CSD2
Rrp44_S1
OB_HELZ2
F-box_4
Motif
Other DBs
NCBI-GeneID:
121121455
NCBI-ProteinID:
XP_040572324
LinkDB
All DBs
Position
8:complement(16683677..16687408)
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AA seq
1043 aa
AA seq
DB search
MGDHDVVENEDRVTVVDKRIQLRLRGGQVLRVVRQHYLRKDIPCGSELCFEGCQEALSRR
SRLPKDATHYLVPFSDILANFMPILEYQELTGIIFLQSVVNLNTNSNKCRRVSKIIRDPK
KASIYFPNEFSTNTFEPRMEGQESYCLYQAQLSFKAASWYYEHLGGQKPIVILTENIKVK
ALFENKRYEIFFLSLEEYLKDFWPNLDSAFDTYKSLKALDESSTKGSEFEDYIKTEMIEA
GIKSGRLLEGILRVNKYHSTSEAFVTDFKSQYEIFIPGHINRNRAVDGDVVAINLLPKSE
WVSRSKRLENKKSYLSESTWERKGDVDRCGKVVGIIQRNWREYVASYQGREVEVIEDRKT
RSILVVPFERKIPKIRILTSQNLNGQRFVVAIDNWPSYSNYPIGHFVRRLGDIGDLETEI
DCLLMENNISVGPFSSGILNEMPNGDNWKPDPNEVSNNRNDLRHSHFIMSIDPQGCEDVD
DALSIRTLKNGNLELGVHIADVTYFVKSGSLTDKEASQRATTVYLADRRYDMLPSVLSGN
LCSLLGGVERYAVTVLWELDPKDPSTVISVWYGRTLIRSRYKLTYEAAQTIIDGNKSPED
IREMVAELKNVKGQSLGKRCNQLREMLTTLCKVALEIQKKREKEGGLSLESTEAVFEFES
SNIEDLKPKEHLIVHEVVAECMIFANHWVAKKISKAFPDFSLLRRHPYPKREYFEELINA
AKSKGWNIETYSNKALADSLNSCRDPNDLIINILLRTMATLAMVKAVYFSTGSLNRDEWY
HYGLAVSHYTHFTSPIRRYADVVVHRLLLAALKNQNWWDFDSEQSVPNNEELSELCIHIN
DRNKAAQKIQRASAQLFQTLYFKNRSPYDPGCIVEAVISSIKSNGFIVYIPRYALKGPVY
LSNAEDQVLWHDKKSNPSWETGLLWTEEDNSIHIETLHGKKVYKLFDHVTLCIQLSGTDA
HAHSLTFHLLSPKPPRDSIARNEDGKPIDFFNALKLEQEEEDNKSLSETEEMKRNNGNQR
KKKSVYSFFKDLKKTSISTNDFL
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
atgggagatcatgatgtcgtagagaacgaagatagagttaccgttgtggataagagaatc
cagcttcgacttcgtggaggacaagtgcttcgagtcgtacgacaacactatcttcgaaag
gatatcccatgtggttccgagctgtgtttcgaaggttgtcaggaggctcttagcagaaga
agtcgacttcccaaggatgccactcattaccttgtccccttctcggacattcttgccaat
ttcatgcccattctggagtaccaagagctaacagggattatttttctacaatcagtcgtg
aatttgaataccaattccaataaatgtcgacgtgtatccaaaatcatacgagatcccaag
aaggcatccatctacttccctaatgagttctcaacaaatacgtttgagcccagaatggaa
gggcaagagtcctactgtctctatcaagctcaactttccttcaaagctgcctcttggtac
tatgagcacttgggaggtcaaaaacctatcgtcatcctcacagaaaatataaaggtcaaa
gccttatttgaaaataaacgctatgaaatattctttttgagtcttgaagagtatcttaaa
gacttttggcccaatttggactctgcctttgatacttataaatcgttaaaggctcttgat
gaatccagtacaaaaggctctgaatttgaagactacataaaaacagaaatgattgaggca
ggcataaaatccgggcgtttattagaagggattctacgagtgaataaatatcatagcact
tcagaggcatttgttacggattttaaatctcagtatgaaatctttataccgggacatata
aatcgaaatagagctgtggatggagatgtagttgcaataaatcttcttcccaaatctgaa
tgggtaagtcggtccaagagattagagaataagaagtcatacctgagtgagtctacgtgg
gagcggaagggagatgtggatcgatgtggaaaagttgttgggattattcaaagaaattgg
agggaatacgttgcgtcatatcaagggagagaagttgaagtcattgaagacagaaaaact
agatctattcttgttgttccatttgaaaggaaaatccctaaaattcgtatattgacatca
caaaatttgaacggacagcgatttgttgttgctattgataactggccctcgtattccaat
tatcctattggacattttgttcgaaggttgggtgatatcggggatctggagacggaaatt
gattgtctacttatggagaataatatatcagttggtccttttagctctggaatattaaat
gaaatgccaaatggtgataattggaaaccagaccctaatgaagtgtctaataacagaaat
gatttacgccattctcattttattatgagcattgatcctcaaggctgtgaagatgttgat
gatgccttatctatcagaacattgaaaaatggtaatcttgagctcggagtgcatattgct
gatgtcacttattttgtcaagtctgggtcgttgacagacaaagaggcatcacaaagagca
acgactgtatatttagcagatcgacgttatgacatgttaccttcagttttgtccggtaat
ctttgctctctattaggaggagtagaaagatatgctgttacagtactttgggaattagat
cccaaggatccatctaccgttataagtgtttggtatgggagaactcttataaggtctcgt
tataagttgacttatgaagctgctcaaactataattgacggaaataaaagtcctgaagat
ataagggagatggtggctgagctaaagaacgtcaagggtcagtctctaggtaaaagatgt
aaccaacttcgggaaatgttgactacactctgtaaagtagcacttgaaatacaaaaaaag
agagaaaaggaaggaggtctttcattagagtcaacagaagctgtttttgaatttgaatcc
tcgaatattgaagatttaaagccaaaagaacatttaattgtgcatgaagtcgtagctgaa
tgtatgatttttgcaaatcactgggttgcaaaaaaaatttcgaaggcatttcctgatttc
agtctgctacgtagacatccataccccaaaagagaatattttgaagaactcattaatgct
gcaaagtcaaagggttggaacattgaaacatatagtaacaaggctctggctgattctctt
aattcatgtagagatccaaatgatcttataataaatattttgctccgaactatggcaact
ctggctatggtaaaagctgtatatttttctactggctctctcaatagggatgaatggtac
cattatggacttgctgtaagtcattacactcattttacatcacccattcgtcgctatgcg
gatgttgtggttcatagacttttactcgctgcgcttaaaaatcaaaattggtgggatttt
gacagtgagcaaagcgttccaaacaatgaggaactaagtgaactttgtatacatatcaat
gatagaaacaaagctgcccaaaaaattcaaagagcttctgctcaactctttcaaactctt
tattttaagaacagaagtccttacgatcctggctgtattgtcgaagctgttataagttcc
atcaaatcaaatgggttcattgtctacattccacgctacgctcttaagggtcctgtatat
ctttcaaatgctgaagatcaggttctttggcatgataaaaaatcgaatccatcatgggaa
acggggttactatggacggaggaagacaactccattcatatcgagactcttcatggtaag
aaagtctataaactatttgatcacgttacactctgtattcaactttctggaacggatgca
catgcacacagccttaccttccacttgctatcccctaaaccgccaagagattctatagct
cgaaatgaggatggcaagcccattgatttcttcaacgcacttaagttggaacaagaggaa
gaagataacaaatcactctctgaaactgaggaaatgaaaagaaataacggaaatcaacga
aaaaagaagagtgtttattcattctttaaagatcttaagaaaacatcaatttccaccaat
gattttttatga
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