Lepeophtheirus salmonis (salmon louse): 121121696
Help
Entry
121121696 CDS
T08214
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
KO
K12857
Prp8 binding protein
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121121696
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lsm03041
]
121121696
Spliceosome [BR:
lsm03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
121121696
Complex C
U5 SnRNP specific factors
121121696
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
WDR55
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
Beta-prop_SCAP
NBCH_WD40
Beta-prop_EIPR1
Beta-prop_DCAF4
Beta-prop_RIG_2nd
Beta-prop_SPT8
Ge1_WD40
eIF2A
WDR90_beta-prop_4th
Beta-prop_WDR19_1st
Beta-prop_IFT140_1st
Beta-prop_WDR35_TULP_N
Beta-prop_Nup120_160
Motif
Other DBs
NCBI-GeneID:
121121696
NCBI-ProteinID:
XP_040572600
LinkDB
All DBs
Position
7:13444234..13445673
Genome browser
AA seq
359 aa
AA seq
DB search
MIDTPAPSNNINLKRKTDSSPPDTSVAVFKKPRDELEVLNKKEIKVADGPPRSSNLEAPI
MLLSGHEGEIYSAKFHPDGNILASSGFDRQIYLWNVYGECENFAVISGHTGAILDLNFSG
DGSYLYTSSTDKTVGVFDSTTGQRIKRLKGHTGFVNTCHPARRGPPLIVSGSDDCTIKTW
DQRKRGCVHSFNNTFQVTGVTYNDTADQIITGGIDNDLKIWDIRKNNIIYTLSGHTDTIT
GLSLSPDGSYALTNSMDNSLRIWDIRPFVTGERCVKIFSGHKHNFEKNLLRCTWSPDGAM
IAAGSSDRFVHIWDTTSRRILFKLPGHLGSVNEIDFHKLEPIVLSASSDKNIYLGELDL
NT seq
1080 nt
NT seq
+upstream
nt +downstream
nt
atgattgatactccggcgccgagtaataatataaatttgaagcggaaaacggactcttcc
cctccggatacatccgttgctgtctttaagaagcctcgtgacgagttagaagtcttaaat
aagaaagaaatcaaagttgcagatgggccgccaagaagttctaatttggaagcccctatt
atgcttctctctgggcacgaaggagagatttattccgcaaagtttcatccagatggaaat
attcttgcttcatccggatttgatcgacaaatatatttgtggaatgtctatggggaatgc
gaaaactttgctgtgatttcgggtcacacaggagccatccttgacttaaacttctctgga
gatggaagttacctctacacgtcaagcacggataaaacggttggggtatttgactctaca
acaggacaaagaataaagcgactaaaaggacatactggatttgtgaatacgtgtcatccg
gctagaagaggtcctcctctcattgtaagcggctcagatgattgtaccatcaaaacgtgg
gatcaacgtaaaagaggatgtgttcattcatttaataacacgttccaagtcacgggtgtt
acttataatgacacagccgatcagatcatcactggtggaattgacaacgatcttaaaata
tgggacattcgcaaaaataatatcatatatacgctatcaggtcatacagatacaattacc
ggtctttctctttctcctgatggttcctatgcccttactaactcaatggataattcattg
agaatatgggatatccgaccgtttgtgacgggggaaagatgtgtaaaaatattttctgga
cataagcacaactttgaaaagaatttgttacgatgtacctggtctccagatggtgcaatg
attgcggctggatcttcagatcgctttgttcatatatgggatacaacttccagacgtatt
ctttttaagcttccaggtcatttgggttcagtgaacgaaattgatttccacaaactagaa
cctatagtattgtctgcatcaagtgacaagaatatctacctaggagaattagatctataa
DBGET
integrated database retrieval system
