Lepeophtheirus salmonis (salmon louse): 121121835
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Entry
121121835 CDS
T08214
Name
(RefSeq) LOW QUALITY PROTEIN: replication factor C subunit 4-like
KO
K10755
replication factor C subunit 2/4
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm03030
DNA replication
lsm03410
Base excision repair
lsm03420
Nucleotide excision repair
lsm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
121121835
03410 Base excision repair
121121835
03420 Nucleotide excision repair
121121835
03430 Mismatch repair
121121835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lsm03032
]
121121835
03036 Chromosome and associated proteins [BR:
lsm03036
]
121121835
03400 DNA repair and recombination proteins [BR:
lsm03400
]
121121835
DNA replication proteins [BR:
lsm03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
121121835
DNA Replication Termination Factors
ELG1-RFC complex
121121835
Chromosome and associated proteins [BR:
lsm03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
121121835
DNA repair and recombination proteins [BR:
lsm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
121121835
Check point factors
HRAD17(Rad24)-RFC complex
121121835
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA
Rep_fac_C
RCF1-5-like_lid
DNA_pol3_delta2
AAA_lid_RFC1
Rad17
AAA_22
AAA_11
Mg_chelatase
AAA_16
ResIII
Gp44_lid
AAA_24
SLFN-g3_helicase
AAA_2
AAA_30
RuvB_N
AAA_7
AAA_assoc_2
MCM
AAA_19
DUF815
AAA_5
bpMoxR
Motif
Other DBs
NCBI-GeneID:
121121835
NCBI-ProteinID:
XP_040572764
LinkDB
All DBs
Position
7:14475520..14476847
Genome browser
AA seq
355 aa
AA seq
DB search
MDAFLKTGKIGVFKDTNGTKTSKSSKGPAPWVEKYRPKTVDDVAYQDEVILVLKKSLQGA
DLPNLLFYGPPGTGKTSTILAACRELFGDAYKDRILELNASDERGISVVRHKIKNFARLT
AGGTLPNGKSCPPFKVIILDEADSMTKDAQSALRRTMEKEGKSTKFCLICNYVSRIIEPL
TSRCAKFRFKPLEKSILSIRLESIAQKEKLNIKDTKALNAFIQTSEGDLRRAITSLQSCS
RFSAGTPITEDIVLETAGVIPNEWISSLXKACASNSYEKVEAFVDNLIAEGYSASQLFIQ
VHEWVLSPEDHDFKDIGKANIAEAIAVNEHRLLEGSNEYLQIMDLCCVIMKEMNK
NT seq
1068 nt
NT seq
+upstream
nt +downstream
nt
atggatgcatttctaaaaacgggcaaaataggagtattcaaggatactaatggtacaaaa
acgtcaaaatcctcaaaaggcccagctccatgggttgaaaaatacagacctaaaaccgta
gatgatgttgcctaccaggatgaagttatattggtccttaaaaagtcattacagggagcg
gatcttcctaatcttttattttatggaccaccaggcaccggtaaaacatcaaccatactc
gcagcttgtcgtgaattgtttggagatgcatacaaggatcgtattctagagttaaatgca
tccgatgaacgaggaatatcagttgttagacataaaattaagaattttgctcgactaacg
gcaggaggaactcttccaaatgggaagtcctgtcctccttttaaagtcatcattctggat
gaagcggactccatgaccaaggatgcacaatctgctcttcgtagaaccatggaaaaggaa
ggaaagtccacaaagttttgtcttatttgtaattatgtttctcgaataattgagcctctg
acatctcgttgtgctaaattccgttttaagccccttgaaaagagcattctttctatacgt
ctggagtctattgctcaaaaagaaaagcttaacattaaggataccaaggcactcaatgcc
tttatacaaacttcagaaggagatcttcgtcgagctattacttcccttcagtcgtgcagt
cggttttccgctggtacacccatcaccgaagatattgtattggaaactgcgggtgttata
cccaatgaatggatttcctctctanaaaaagcatgtgcatctaactcatatgaaaaagtt
gaagcatttgtagataatcttattgctgaagggtattctgcctctcaattattcattcaa
gttcacgaatgggtattgtcccctgaagatcatgattttaaggatataggaaaggccaat
atagctgaggcaattgctgtaaatgaacatagactcctggagggatctaatgaatatctt
caaatcatggatttatgttgtgttattatgaaagagatgaataagtga
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