Lepeophtheirus salmonis (salmon louse): 121122409
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Entry
121122409 CDS
T08214
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121122409
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lsm03041
]
121122409
Enzymes [BR:
lsm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121122409
Spliceosome [BR:
lsm03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
121122409
Complex B
121122409
Complex C
U2 SnRNP specific factors
121122409
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
MscL
Cas3-like_C_2
M_C
ERCC3_RAD25_C
P-loop_SecA
Meis_PKNOX_N
Motif
Other DBs
NCBI-GeneID:
121122409
NCBI-ProteinID:
XP_040573324
UniProt:
A0A0K2T725
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All DBs
Position
8:16065235..16068181
Genome browser
AA seq
764 aa
AA seq
DB search
MSRHRRGGGLYAHFVNDSSSGDRPYRGAEIPPPSSLSSRQSSSAGRNPNPNSNSGTTNSS
KSFNYKDFQELPIKKTRSEEDYFNEDEEDDKEKERKKQEESFCPYIPSPGSPGYIPPSSQ
KSPKKSEDEDEEEDSLDTFMANLEKDAKSQGLKSLNKPKDTTKTFKGVRTDIDEADNEES
YYKWLEENPNAGLMPVDEDDDDIEYDEDGNPIAPKLPKYIDPLPPMDHSAIEYMPFDKCF
YKEHNDITCLSPIQVIDLQQKLGIKISGVSPPKPVTSFGHFGFDEVLLKSIRKSEFTQPT
PIQSIGIPVCLSGRDAIGIAKTGSGKTATFLWPIIIHIQHQRPLLNGEGPIALILVPTRE
LALQIYTEAKKFGKVYDLNAVCAYGGGSKWEQSKCFESGAEIAIATPGRMIDMIKMKVTN
LQRVTYLVLDEADRMFDMGFEAQVRSICDHVRPDRQTLLFSATFKKKVEKLARDVLTDPI
KVVQGSIGEASEDVTQIVKVLEKGGYKWEWVLQNLVEFTSAGSVLIFVTKKLNCEELAQN
LKLKEFECELIHGDLNQHVRNEIIYKFKKKQFPILVATDVAARGLDIPHIRTVLNYDIAR
DIDTHTHRIGRTGRAGIKGTAYTLVTEKDKEFAGHIVRNLEQANQDVPKELMDLAMQSSW
FKNSRFKKGKMGKTVGLGFKESVDSLNGDSKAISGPVSGGRLGVVREAYKNQFMTNFRKA
SDEATSSDQPSMPPPPPPPSNQPTIPSLDSSSQKTGKKRKSRWD
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgtcatcgtcgtgggggcggcctctacgcccattttgtgaatgactcttcctcg
ggggatcggccctatcgaggtgcagaaattcctcctccttcgagtctgagtagccggcaa
tccagttctgcaggtagaaatccgaatcccaactccaactcaggaactactaacagtagt
aaatccttcaattacaaggatttccaagagcttcctataaagaagacgcgttccgaggaa
gattacttcaatgaggatgaggaggatgataaggaaaaagagagaaaaaagcaggaagag
tctttctgtccctatatcccttctccgggctctccgggatatattccgccttcttctcag
aaaagtcctaaaaagtcggaggatgaggacgaagaagaggattctcttgataccttcatg
gctaatctagaaaaggatgctaagagtcaaggtcttaaatcacttaataagcccaaagat
actaccaagactttcaagggtgttcgcacagatattgacgaagctgacaatgaagaatca
tattataaatggcttgaagagaatcctaatgctggattaatgcctgttgatgaagatgac
gatgatattgaatatgacgaagatggtaaccccattgcgcctaaactacccaaatatatc
gaccccctccctcccatggatcactccgctatcgagtacatgcctttcgataaatgcttt
tataaagagcacaatgacatcacttgcctttctcctattcaagtcattgatctgcaacaa
aaattaggaattaagatctcaggtgtatctcctccaaagcctgttacaagttttggtcac
tttggttttgatgaagttctacttaaatctatacgcaaatctgagtttactcaacccact
cccattcagtccattggaattccggtttgtctctctggaagggatgctattggtattgcc
aaaactggctctggaaaaacagccacttttctttggcccattataattcatattcaacat
cagagacccttacttaatggagagggtcctatagcacttattcttgtccccacaagagag
ctcgcacttcaaatatatacagaagcaaaaaaatttggaaaagtttatgatttaaatgct
gtttgtgcctatggtggaggatccaagtgggaacaatcaaaatgttttgagtcaggggcc
gaaatcgctattgctactccagggagaatgattgatatgataaaaatgaaagtaactaac
ttgcaaagagttacatatttagttttagatgaggccgatagaatgtttgatatgggattt
gaggctcaggtacgatccatttgtgatcatgtacgccctgatagacaaaccctcctcttt
tcagccacatttaagaaaaaagttgaaaaacttgctcgggatgttcttacagatcctatc
aaagttgtgcaaggctcaataggagaagcttcagaggatgtaacacaaattgttaaagta
ctggaaaagggaggctataaatgggaatgggtcttgcaaaacctggtcgaatttacatcc
gctggtagtgttcttatctttgttactaaaaagttaaattgtgaagagttggcgcaaaat
ttaaaattgaaagaatttgaatgtgaattgatccatggagatttaaatcaacatgttagg
aacgaaatcatttataaatttaagaaaaaacagtttcctattttagttgcaacagatgtt
gctgctagagggctggacatacctcacatacgcacagttctaaactatgatatcgctaga
gatatcgacacacatactcatagaattgggagaacaggacgggcaggaattaaaggtact
gcgtatacacttgtgacggaaaaggataaggaatttgctggacatatcgtacgaaatctt
gagcaagccaaccaagatgttccaaaggaattgatggaccttgccatgcaaagctcttgg
ttcaagaattcgcgttttaaaaagggtaaaatgggaaaaacagttggacttggctttaaa
gaatcagtggattccttaaatggggattccaaagctatatctggcccagttagtggcggc
cgattaggagtagtaagagaagcatataagaatcagttcatgacaaatttccgtaaggct
agtgatgaagcaacttcaagtgatcaaccttcaatgcccccacctccaccgccaccctct
aatcagcccactattccttctctcgatagttcatctcaaaagacagggaagaaaagaaag
agtagatgggactga
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