Lepeophtheirus salmonis (salmon louse): 121122524
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Entry
121122524 CDS
T08214
Name
(RefSeq) uncharacterized protein isoform X1
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121122524
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lsm03041
]
121122524
Enzymes [BR:
lsm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121122524
Spliceosome [BR:
lsm03041
]
Complex C
Other components
Step II factors
121122524
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
KH_DEAH11
AAA_22
OB_NTP_bind
ResIII
AAA_19
AAA_29
AAA_25
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
121122524
NCBI-ProteinID:
XP_040573478
LinkDB
All DBs
Position
8:4837244..4844917
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AA seq
1368 aa
AA seq
DB search
MGPIERVKDLSNKFREDIKAIEDRIKKLSLDLKGKKKKKRNFLSKSLKERKVETINALQA
ELETKLIEMEEFQSRILEISSLNTPNKEEKLNLEIDIFSKHLPIYRFRSTILESIEKNDV
TILVAETGSGKSTLVTQFLHTNDEDIVIYCCQPRKLAANGLMEYTNTCLGLDPKKAIVAF
DFNMWDTNYIPGRSKIVFTTNNGLLSRWREDNCLKEIDVVIIDETHERTLSTDLLLGIMK
KLNKCNHLREKSIKTLIMSATIDPSIFYNYFSSSEIKVNCISIPGKTFPVQVIYDEAPLS
NQPKDYVSRTTSKILEILKNKELGDVLAFLATPPEVEEAVDTLKVKLKSTNRNVKVYPLH
SKVEINDQRKLFSKDGVLKKEQRVIISTNIAETSVTLPDITCVIDSGRHKEFSYDMVRNV
GALTLSSISQSSALQRKGRAGRTRPGTCYRLYTKNDYDNFISSSSPEILCLPMDQALLTL
FHLGFSNPETFDFIDPPSREAISVGIDSLSSLGAIETHSSNTYLMTEIGNKMTRFNVIPK
LAHLIVNTLSLHKDLILDVLIICGVVSRGYSIFHRGEYLDAAQLKKLKFCNDKGDFITMI
DAFKLWYEVPMKRRGMWALENMISNKTMNEVLKFVMNNLRIVETKFHHRIPRNNRQIQFG
CSKAKYGDIMKLIYSSFKKSIAVFAGHPKAGYINSINGDVMKLHPSSSIYCLERSLKYVC
YDKILTTSQTFIFHVSMVKSEWMDEDDIFIKDQIIELKTVRKYEGYPMMGSSTIKKYVLH
KLKKLRNDLNMKISINSVERGITHFFEIDISLDKGSISTWCHPENESIVIPSVKNLLNAA
LEEVLNEKMNIPLDTNSNLLVIGASGRAIYHLNSKSYLSFKIVHKNKSDKVEILIKEIQE
LMTKNSIDFDFFKRKGEPFFSFKQSQVGIQARSLVLEHYSDVLKCIWNPKSLNQTSVWII
FSIYTYVSTDEVVKAFQEKIDLDMNIGAEVVAMPFKEDSKVNFRVNVPSFEVGERIFNNC
RNAYFASFKKWKFLSSTLSVKEVFVIPKWLARMRKKTLERCHDKMRFYDGVDGTIISVLH
TSKSTSHFSFTDLLSNDTFFLRLIQGVKIVFEGFSSSFDLKGHFKQIRQVEIINGVVIVK
EKKAPCLSFTIFGELVSIKKAKKALISYFDELKGKTLTLSFDGRNGPQGVLPTLIKKYGT
NLMSLSIRNGVHNIVICLEKKIIQITGQNDVISALDEEMNGLFADNGIEELYFQIACILC
RVSLSTKSNCRLQLCGHNICNGCLQIVVTFTDIPIKCPIKECGTVLSVMDIQSGISSCES
IKKKFYEKCQKNYFLTSGLRSCVAYNCDNIFEISEDKEDTICCKSCSL
NT seq
4107 nt
NT seq
+upstream
nt +downstream
nt
atgggtcctatagaaagagtcaaggatctatcaaataagttcagggaggatataaaagca
attgaagatcgtattaaaaaattaagtttggatcttaaaggcaaaaagaaaaagaaaagg
aactttttatctaagtcattgaaagagaggaaagtggaaacaattaatgcacttcaagcc
gagttggagacaaaattaattgaaatggaagagtttcaatctcgtattcttgaaatttcg
tctttgaataccccaaataaggaggaaaaattaaatttagaaattgacattttttcaaag
catcttccaatttaccgatttagaagtacaattttagaatccattgagaaaaatgatgta
acaatacttgttgctgaaacgggctctgggaaatcgactctcgtaactcaatttttgcat
acaaatgatgaagatattgtaatatattgttgtcagccacgaaaattagcagcaaatgga
ctaatggagtacacaaatacttgtcttggtctggatccaaagaaagcgattgttgctttt
gatttcaacatgtgggataccaattatattcctggacggtcaaaaattgtatttactacc
aacaatggccttttatcaaggtggcgagaagataattgcttgaaggaaattgatgtagtg
attatagatgaaacacatgagagaactttatctacagatcttttacttgggattatgaag
aaattaaacaagtgcaatcatttacgagaaaaaagtattaagaccctcataatgtctgct
actattgatccatcgatattttataattatttttcaagctctgaaatcaaagtgaattgc
atttctattcctggaaaaacattccctgttcaagttatttatgatgaagctcctttatcg
aatcagcccaaggactacgtttcacgaacaacttcaaaaatattggaaattcttaaaaat
aaagagttaggtgatgtcttagcttttttagctacaccacctgaagttgaagaggctgtt
gatactcttaaagtaaagttaaagtccacaaatagaaatgttaaagtttatccgcttcat
agtaaggtcgagatcaatgatcaacgaaagttgttttcaaaggacggtgtcttaaaaaaa
gaacaaagagtgataatttctaccaatattgcagaaacttctgttactttgccagatata
acatgtgtgattgattctggtcgacataaggagttttcatatgatatggttagaaatgtt
ggtgcattgacattatcctcaatttctcaaagctctgctcttcaaagaaaaggaagagct
ggtaggaccagacctggaacttgctacagattgtatactaaaaatgattatgataatttc
atttcttcttcttcaccggaaatattgtgtttgcctatggatcaagcattactcacattg
tttcatcttggattttctaatcctgaaacttttgacttcattgatccgccatcaagagaa
gcaatttctgttggaatagattcactttcttccctcggggctatagaaactcactcttct
aatacttacttgatgactgaaattggtaataaaatgactagattcaatgttattcccaaa
ttggctcatttgattgttaacacattaagtttgcacaaggatttgatattagacgtattg
atcatatgtggggttgtctctagagggtatagtatatttcatcgtggtgaatacttagat
gcagcacaacttaaaaagttaaaattttgtaatgataaaggtgatttcataacaatgatt
gatgcctttaaattgtggtatgaagttcccatgaaaaggcgaggcatgtgggcccttgaa
aatatgatcagtaataagacaatgaatgaggtattgaaatttgttatgaataatctcaga
attgttgaaactaagtttcatcatcgaattcctcgaaataacagacaaatacaattcggt
tgcagtaaagctaagtatggtgatattatgaaattaatttattcttcattcaagaagtca
attgctgtttttgctggacatccaaaagcaggatatattaacagtataaatggtgatgtc
atgaaacttcatcccagtagtagtatttactgtttggagcgtagtttgaagtacgtttgc
tatgataaaattttgacaacctcacaaacgtttatatttcacgtatctatggtaaaaagt
gaatggatggacgaagacgatatttttatcaaggatcaaattattgagttgaagactgta
agaaaatatgaaggatatccaatgatggggtcctctacgataaagaaatatgtactccat
aagttgaaaaagttgagaaatgatttaaatatgaaaatttcaatcaattctgttgaaaga
ggaatcacacatttttttgaaatcgatatatcacttgataaaggatctatttctacatgg
tgtcatccagaaaacgaatctattgtcataccctcagtaaaaaatttgttaaatgctgct
ttagaagaggttttaaatgaaaaaatgaatataccattggatacaaattcaaatttactt
gtgattggtgcttcaggacgcgcaatttatcacttaaattcaaaatcatatttaagtttc
aaaatagttcataaaaataaatctgataaagtagaaatactcattaaagaaattcaagaa
ttaatgaccaagaatagcatcgactttgatttttttaagcgtaaaggtgaaccatttttt
tcattcaaacaaagccaagtaggcattcaagctagatctcttgtactggaacattattca
gatgttttaaaatgtatatggaatccaaagagcttaaatcaaacttctgtatggatcatt
ttcagtatatatacttatgtctctactgatgaagtggtgaaagcatttcaggaaaaaatt
gacctggacatgaatattggtgcagaagttgtggcgatgccttttaaggaagattcaaaa
gtgaattttagagtcaatgttccttcttttgaagtcggtgaaaggatattcaataattgt
aggaatgcctattttgcatcatttaaaaaatggaagtttttgtcttcgactttgtccgta
aaggaggtttttgtgattcctaaatggttagctcgtatgagaaaaaagacattagaacgt
tgccatgacaagatgcgcttttatgatggcgttgatggtacaattatttccgtattacat
acttccaaatcaacttctcatttttcattcaccgatttattgtcgaatgatacatttttt
cttcgattaattcaaggagtgaaaattgtatttgaggggttcagctcttcatttgatttg
aaaggtcattttaaacaaatacgacaagtagaaataataaacggtgttgttattgtgaaa
gaaaaaaaagcaccctgtcttagcttcacaatttttggtgaattagtgtcaataaagaag
gcaaagaaagctttaatatcatattttgacgaactaaagggtaaaacgctgactttatct
tttgacggaagaaatgggccccaaggcgttttaccgactctcataaaaaaatacggaaca
aatttaatgagtttgagtattcgaaatggtgttcataacattgtaatttgtcttgaaaag
aaaattattcaaataactggtcagaatgatgtcataagtgcattggatgaggaaatgaat
ggtttattcgctgataatggcattgaggaattgtatttccagatcgcatgcattctttgt
agagtttcactctctacaaaaagtaattgtcgtcttcagctatgtggacataatatttgt
aatggatgtctacaaatagtggtcacattcactgatattcctattaaatgcccaattaaa
gaatgtggtacagttttgtcagtgatggatattcaaagtggaattagttcatgtgaatct
attaaaaaaaaattttacgaaaagtgccaaaaaaattattttttgacatctggattaaga
tcatgtgttgcgtataattgtgataatatttttgaaatatccgaggataaggaggatact
atttgctgtaaaagttgctccttgtaa
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