Lepeophtheirus salmonis (salmon louse): 121122659
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Entry
121122659 CDS
T08214
Name
(RefSeq) DNA polymerase beta
KO
K02330
DNA polymerase beta [EC:
2.7.7.7
4.2.99.-]
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
121122659
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lsm03400
]
121122659
Enzymes [BR:
lsm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
121122659
DNA repair and recombination proteins [BR:
lsm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
121122659
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
X-family DNA polymerases
121122659
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B_palm
HHH_8
DNA_pol_B_thumb
DNA_pol_lambd_f
HHH_5
NTP_transf_2
MTPAP-like_central
MG3
Motif
Other DBs
NCBI-GeneID:
121122659
NCBI-ProteinID:
XP_040573622
LinkDB
All DBs
Position
8:9148710..9151090
Genome browser
AA seq
306 aa
AA seq
DB search
MSKRKVSPTKSSINNLNADFCELLNELATFEQNVNGNKFKSNAYRKAANVLSKHSTRITS
GDEARKLDGIGAKIALKIDEFIETGNLRKLDNIRTDDKANAINLLTRVIGIGPVKARELV
ENEGIRTVEDLRKIEEKLTNAQKTYTMTICGSYRRGLPTSGDVDVLLTHDSFTSSSTNDS
QKKGHHLAKVVSSLQKAKFITDTLSHGPTKFMGVCRLTSDSKYRRLDILLLPKDQYYCGV
LYFTGSDMFNKKMRAHALEKGFTLNEHSLRPIDEAQLPLDPLPVSSEEDIFDYISFDYKD
PEERSL
NT seq
921 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaacgtaaagtatctccaactaaatcttctattaataatttaaatgcagatttt
tgtgaattgctaaatgaattagcaacttttgagcaaaatgttaatggaaacaaatttaaa
tcgaatgcctatcgtaaagcagcgaatgtattgtcaaaacattcaactcggatcacctct
ggagatgaggcaaggaagttggatggtatcggagctaagattgcgttaaaaattgacgaa
tttattgaaactggtaacttgagaaagttggataatatccgtacagatgacaaagctaat
gcaatcaatctattgactcgtgtaattgggattggtcctgtcaaagccagggaattggtg
gaaaatgaaggtattcgtacagttgaagatcttcgtaaaatagaagaaaagttgactaat
gcacagaagacatatacaatgaccatctgcggatcctatcgaagaggcctccccacgagt
ggagacgtcgacgttctcctcacacacgattcatttacttcatcttccactaacgattct
caaaagaaaggacatcacctagccaaagtcgttagttcccttcaaaaagccaagtttata
acagataccctttcgcatggtcctacaaaatttatgggcgtttgtcgtctcacatcagat
tcgaaatatcgtcgacttgacattttattactcccaaaggatcaatactattgcggagtg
ctatattttacagggagtgacatgttcaataagaagatgagagcccatgccttggaaaag
ggattcactctgaatgaacatagtctcagacccatagatgaggctcagcttcccctcgat
ccacttcccgttagttcagaggaagatatattcgactacatcagctttgactacaaagac
ccagaggagagatccctttaa
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