KEGG   Lepeophtheirus salmonis (salmon louse): 121122718
Entry
121122718         CDS       T08214                                 
Name
(RefSeq) cleavage stimulation factor subunit 1
  KO
K14406  cleavage stimulation factor subunit 1
Organism
lsm  Lepeophtheirus salmonis (salmon louse)
Pathway
lsm03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:lsm00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    121122718
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lsm03019]
    121122718
Messenger RNA biogenesis [BR:lsm03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     121122718
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz WDR55 CSTF1_dimer Beta-prop_EML_2 Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_2nd ANAPC4_WD40 Beta-prop_CAF1B_HIR1 WD40_Gbeta EIF3I Beta-prop_EML Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_RIG_2nd Beta-prop_VPS8 Beta-prop_WDR75_1st Beta-prop_Aladin NBCH_WD40 Beta-prop_TEP1_C Beta-prop_IFT140_1st Beta-prop_EIPR1 Beta-prop_SCAP Beta-prop_IFT122_1st WDR90_beta-prop_4th Beta-prop_SPT8 Ge1_WD40 Beta-prop_DCAF4 Beta-prop_NUP159_NUP214 Beta-prop_WDR19_1st WD40_RFWD3 Beta-prop_Vps41 Beta-prop_NWD2_C Beta-prop_WDR75_2nd Beta-prop_WDR35_TULP_N RMC1_N Beta-prop_LRRK2 Cytochrom_D1 Beta-prop_EDC4L Beta-prop_HPS5 PROPPIN B-prop_COPA_B_2nd Beta-prop_WDR11_1st Beta-prop_pof12 DUF7099
Other DBs
NCBI-GeneID: 121122718
NCBI-ProteinID: XP_040573683
LinkDB
Position
1:complement(25218869..25220591)
AA seq 445 aa
MSVFKPKKDSGMDPPEFTIGGNVLKNRDALYRLIISQLFYDGYQQVALQLSGIVGADPPC
PPSERLHKVVSLGLEKERNAIAATKVSAASNGLGGDLYGLDLEFDTEMRSEAPEPALYET
AYVTSHKAFCRAGAFSNDGQLCATGSADASIKVLDVDRMLAKSNNDIPVSKQSEGHPVIR
TLYDHVDEVTCLEFHPKETILASGSKDNTIKLFDYSKASAKKACRTIIDAEPVQSLSFHP
SGDFLLVGCEHPVVRLYDVNTSQCFVSSIPHQRHTSEVTMVKFSNDGKIYASSSTDGSIK
IWDGVSSKVINTFDEAHDGAEVCSVYFTRNGKYILSSGKDSLIKLWELSTSRCLIAYTGA
GATGRQEHRAQAVFNHTEDYVMFPDEATTSLCCWDSRNASRKQLLSLGHNGAVRNIVHSA
VSPAFLTSSDDFRARFWFKRCSPGT
NT seq 1338 nt   +upstreamnt  +downstreamnt
atgtccgtgttcaaacccaagaaagactctggcatggatcctccagagtttacaatagga
gggaacgttcttaagaatcgtgacgcactttatagacttattatatcccagctgttttat
gatggctatcaacaggtagctcttcaactctctggaatagtcggagcggatcctccctgt
cctccctcagagaggcttcacaaagtcgtttctctaggattagaaaaagaacgcaacgcc
atagctgccacaaaggtatctgccgcatccaatggattgggaggggatctttacggctta
gatctcgagtttgacacggaaatgcggagtgaggctcctgagcctgcgttatatgaaacg
gcttatgtcactagccataaagctttttgtcgtgctggagcttttagcaatgatggacaa
ttgtgtgctactgggtctgcggatgcgtctatcaaggttctagatgttgacagaatgctt
gccaaatccaataatgatatccccgtctccaaacaaagtgaaggacatcccgtcatccga
actctctatgatcatgttgatgaagtcacttgtttagaatttcatccaaaggagactatt
ctcgcatcaggctcaaaggataacactatcaaattatttgactatagcaaagcttccgct
aaaaaagcatgcagaacgataatagatgcagagcctgttcaatctctctcttttcatccc
tctggagattttctgttagttggatgtgagcatcctgttgttcgtctctacgatgtcaat
acaagtcaatgctttgtttcctctattccccatcaaaggcatacctcagaggttactatg
gttaaattttccaatgatggaaagatatatgcctcttcttcgacagatggatccatcaag
atttgggatggtgtctcaagtaaagtcattaatacctttgatgaagctcatgacggtgcc
gaagtatgctcagtttactttactcgtaatggtaagtatattctctcatctggaaaagac
tctcttattaaactttgggagctatcaacgagcagatgtctcattgcttatactggagca
ggcgcaacagggagacaagaacatcgagctcaagctgtctttaatcatacagaggattat
gtcatgtttcctgacgaggctacaacctcactttgttgctgggactcacgtaatgcttct
agaaaacaattattatcactgggacataatggagccgttcgaaatattgtacactcggca
gtttcacctgcattccttacttcatcggatgatttcagagcgagattctggtttaaacga
tgttccccaggaacatag

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