Lepeophtheirus salmonis (salmon louse): 121123071
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Entry
121123071 CDS
T08214
Symbol
fand
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121123071 (fand)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsm03019
]
121123071 (fand)
03041 Spliceosome [BR:
lsm03041
]
121123071 (fand)
Messenger RNA biogenesis [BR:
lsm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
121123071 (fand)
Spliceosome [BR:
lsm03041
]
Complex B
Other components
Prp19-related factors
121123071 (fand)
Complex C
121123071 (fand)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
Suf
TPR_8
TPR_15
TPR_2
NRDE-2
SNAP
DALR_1
Phasin_2
Motif
Other DBs
NCBI-GeneID:
121123071
NCBI-ProteinID:
XP_071746705
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All DBs
Position
8:complement(6602533..6606119)
Genome browser
AA seq
848 aa
AA seq
DB search
MAVVLEEEDLPFEEDILRNPSSIRPWLRYIEHKKSTSRVNLIFERALKELPGSYKLWYAY
LTLRQKHTIKRVPTDPQYEVLNNAYERALVFMHKMPRIWIQYAEFLYKYQRKVTRTRRVL
DRALRALPVTQHDRIWPIYTAFIESHGEALKETGIRVYRRYMQLSPEGAVEDFIDYLIRV
KKLDDASVLLTRLVNGNDRAFSEFVSKRGKSNYALWNDLCKLISENPSEIKSLNVDAIIR
SGLRRYTDQVGHLWCSLADYYIRSGLFERARDVYEESVRSVTTVRDFSQVFDAYSQFQEL
MLSKMMEEMKVASSSTEKVDENSLELAFARFDDLIERRPLLLNSVLLRQNPHNVPEWLKR
VSLYEGKPKEIVKTYTEAVKTVDPKQAVGKLYLLWNNFAKFYEEKKQLSDARIIFEKATQ
VAFLKVEDLAHVWTEWVEMELRNDKYNEALGLVRKAVSPPKRRVSYHDTSETVQARLHKS
LKVWSLYADLEESFGSFQSTKAVYDRILDLKIATPQIVINYGLFLKEHNYFEEAFKAYEK
GIALFKWPNVYDIWNTYLTEFLERYGGKKLERTRDLFEQCLESCPQDYAKNIYILYAKLE
EQHGMARHAMAVYDRAIQSVTKKERFSLYNIYLKKASEIYGVTRTRQIYEKAIEVLEDKE
AREMCVRFAELETKLGEVDRARVIFSHCSQMCDPRTSTEFWSKWKDFEVKHGNEDTLREM
LRIKRSVQHTYNTQVNMMSAQMTAVNTLSDSKDEMKILEKKVMGESNVSAHEILSAPKTS
SIAFIRGETQSDSLEKGLESTNPDEIDIDEEDEEEEGNMGDKVSIGKVEEQVIPSEVFGG
LNNERDTD
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atggccgtggtactcgaagaagaggatcttccatttgaagaagacattctccgcaatcct
tcttcaatacgcccctggctccgttatattgagcataaaaagtctacgtcccgtgtgaat
ttaatattcgaacgcgctctaaaggaacttcctggaagttacaaactttggtatgcgtat
ctcacgcttcgacaaaagcataccattaaaagagtccccacggatccccagtatgaagtg
cttaataatgcgtatgagcgggcacttgtctttatgcacaaaatgcctcggatttggatt
caatatgcggaattcttatataaatatcaacgaaaagtcacgaggactcgacgcgtttta
gatcgagctcttagagctcttccagtcacacaacatgatcgtatttggccaatatacact
gcgtttatagaatcccatggtgaagcattaaaggaaactggtattcgtgtgtatcgccgt
tacatgcaactcagccccgaaggagccgttgaagattttattgattaccttatacgtgtt
aaaaaattggatgatgcatctgttttactcacaagattagtgaatggtaatgacagagcc
ttttctgaatttgtttctaagcgagggaaatcaaattacgctctgtggaatgatctatgc
aaattaatatcagaaaatcccagcgaaattaagtcgttaaatgtagatgctattatacgt
agtggcctcagacgctacacggatcaagtaggacatttgtggtgttcccttgcagattat
tatattcgaagtggtttatttgagcgtgccagagatgtttatgaagagtccgtgaggagt
gtcactactgtaagggacttttctcaagtatttgacgcatactctcaatttcaagagtta
atgctctcaaaaatgatggaggaaatgaaggtcgcttcatcatctactgaaaaagtagat
gaaaactctctcgagcttgcatttgctcgttttgacgatttgatcgaaaggcgtcccttg
ctattaaactctgttttattgcgacaaaatcctcacaacgttccagaatggttgaaaagg
gtttcgttgtatgagggaaagcccaaagagatcgtgaaaacatatactgaggctgttaaa
acagtagatccaaagcaagcagtgggaaagctctatcttctttggaacaattttgccaaa
ttttatgaagaaaaaaaacagttatctgatgctagaattatttttgaaaaggcaacacaa
gttgcttttctaaaagtggaagacttggctcatgtgtggaccgagtgggtagaaatggag
cttagaaatgacaaatataatgaagctctgggtctcgtacgcaaagctgtaagtcctcct
aaaagaagagtttcttaccacgatacatccgaaacagtacaagctcggttacacaagtcc
ctcaaagtatggtcactttatgcagatttagaagagagttttggatcattccaatccaca
aaagctgtttacgatcgaatacttgatctaaagattgcaactccccaaatcgttattaat
tatggacttttcctcaaagagcataattatttcgaggaagcatttaaagcatatgagaaa
ggtattgcactcttcaaatggccaaatgtgtatgacatatggaatacatatctcaccgag
tttttggagcgctatggaggaaaaaaattagaacgaactcgggatttgtttgagcagtgc
ctagaaagttgccctcaagattatgctaaaaatatctacattttatacgccaaactagaa
gaacaacatggcatggcacgacatgccatggctgtttatgacagagccattcaatccgtt
acaaaaaaagaaagattctcactgtataacatttatctcaagaaggcctcagagatttat
ggtgttacacgaacaagacaaatttacgaaaaggcaattgaagtacttgaggataaagaa
gctcgtgaaatgtgtgttcggtttgctgagctcgaaactaaacttggcgaagttgataga
gctcgtgtcattttcagccattgctcacaaatgtgcgatccaagaacctcaactgagttt
tggagtaaatggaaggacttcgaggttaaacatggtaatgaggacacacttagagagatg
ctacgaatcaagagatctgtacaacatacgtacaatacacaagtaaatatgatgtctgct
cagatgacagccgttaacactttatcagactccaaagatgagatgaagattttagaaaag
aaagtaatgggagagagtaatgtctcagcacatgaaatcctttctgcaccgaaaacatcg
agcattgcatttattcgtggtgagactcaatcagattcccttgaaaaaggacttgaaagc
acaaatccggatgaaattgatatcgatgaggaggatgaggaagaagagggaaacatgggt
gataaagtaagcataggcaaggttgaagaacaagttattccgtctgaagtatttggagga
ttaaataatgaaagagacactgattga
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