Lepeophtheirus salmonis (salmon louse): 121123242
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Entry
121123242 CDS
T08214
Symbol
Nup54
Name
(RefSeq) nuclear pore complex protein Nup54
KO
K14308
nuclear pore complex protein Nup54
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121123242 (Nup54)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsm03019
]
121123242 (Nup54)
Messenger RNA biogenesis [BR:
lsm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
121123242 (Nup54)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup54
Nup54_C
TMF_TATA_bd
Motif
Other DBs
NCBI-GeneID:
121123242
NCBI-ProteinID:
XP_040574305
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All DBs
Position
8:7083004..7084781
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AA seq
429 aa
AA seq
DB search
MSFKFGTTSFQQPQVQQQPSMLQQPLQQQPQHLQQQQQQAPSLDLLYSSILQCSVFGDDR
DGLLGRWNLLQASWGSGKAALNQNSIIEIRPDNPLNRFKAIGYTALPSWKDEHELLSVNV
KGKKPSEIDSNVFANGMQGILGNRPEIKVVIESIVAVGDGAEVTFYVKSLGAPQRASAEK
ILAYFYTPGPANNLKNAGLECPVRRIAFSKEQVKEYLDSPPMGVDPRLWKQAQLDNPDPN
KLIPVPMIGFKSLQQRIQCQEVQAKSYQGRLDSIAEEISDLQKRHQDTLALMTETKRKQL
ELGHRVLHVIVRQEATRKLGFTIQPEEEKLRVQLEALYAELSAPTQFKGRLNELLSQIRL
RSSQDGSGSLVLGPSEKYEMDPFLIQDVRSVLKQQQDGIHALVEMVKEDAKDLELIATSL
NKEKEGGGY
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgtccttcaagtttggaacgacatcgtttcaacaaccacaggttcagcagcaaccctct
atgctacaacagccccttcaacaacaaccccagcatctgcagcagcaacaacaacaagcc
ccttctttggacctcctgtactcttccattttgcaatgctctgtgtttggagatgatcgg
gatgggctcctaggtcggtggaatcttcttcaagcctcgtggggctctggtaaagctgct
ctaaatcagaattccataattgagattcggccagataatcctctgaatcgcttcaaggcc
attggttatacagcacttccaagttggaaggatgagcacgagctccttagtgtcaatgtc
aaaggaaagaaaccctcggagattgattctaatgtatttgcaaatggaatgcaggggatc
cttggcaacaggccggaaattaaagtagtcattgaatccattgttgctgtaggcgatgga
gcggaagttacattctacgttaaatccctgggtgctccccaaagagcctctgcagaaaaa
atacttgcatatttttatacaccaggacctgctaacaacttgaaaaatgcaggactggaa
tgcccggttagacgcattgctttttccaaggagcaagttaaagaatatcttgattctcct
cccatgggagtggatcctcgactttggaaacaggctcaattggacaaccctgatcctaat
aaactcatacccgttcccatgattggctttaaatccctccaacaacgtattcaatgccaa
gaagttcaagctaagagctaccagggacgcttagattctatagcagaagaaatatcggat
cttcagaaaaggcatcaagatactcttgcactcatgacggagacaaagcggaaacaattg
gaattgggacatcgagtccttcatgtcattgttcgccaagaagcgacccgaaaactcggt
tttactattcaacctgaagaagagaaactacgtgttcagcttgaagctctctatgcagaa
ctctcagcgcccacgcaattcaaaggaagactaaacgagcttttatctcagattcgtctt
cgatcttcgcaagatggctctggttcccttgtgttaggaccttctgagaaatatgaaatg
gatccattcttaatacaagatgtaagaagtgtactcaagcagcaacaagatggaattcac
gctctcgtggaaatggtaaaagaggatgccaaggacttggagctgattgctacgagtttg
aacaaggaaaaggaagggggtggatattag
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