Lepeophtheirus salmonis (salmon louse): 121123248
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Entry
121123248 CDS
T08214
Name
(RefSeq) LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DHX35
KO
K13117
ATP-dependent RNA helicase DDX35 [EC:
5.6.2.6
]
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lsm03041
]
121123248
Enzymes [BR:
lsm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121123248
Spliceosome [BR:
lsm03041
]
Complex C
Other components
Complex C specific factors
121123248
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Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
AAA_22
DEAD
ABC_tran
AAA_19
nSTAND3
ATPase
T2SSE
AAA_29
FtsK_SpoIIIE
Exo84_C
AAA_30
Motif
Other DBs
NCBI-GeneID:
121123248
NCBI-ProteinID:
XP_040574311
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Position
8:complement(9136629..9139424)
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AA seq
631 aa
AA seq
DB search
MHSRGFLRPQDDEDVFSSWKVDRSDLDPLKETSFIYNATPSTSIQAQRAKLPISKYRDHI
HYLLSQNQTLVVVGETGSGKSTQLPQFLYESVEGIVGITEPRRVAATTLADRVASEVGKP
EIVGYSVRFDDRSRNAKIKYMTEGXLIREMMGDPLLSDYSILIVDEAHERTVHVDILMGL
LKKILNKRKDLKLIVSSATVDAEFIRDFFDNSAILTVEGSSYSVDVFYLTNPCPDYVKEC
AETAVKVHAIETPGDILIFLTGMEEVERCTSFLKEYEVSIGKSKHGLNMSILPMHGSLPY
MDQLKVFRPSQRGLRKIIVATNIAETSITIEGIVYVIDSCFVKLKWYNPETNIDSLIVTE
VSQASAEQRSGRAGRTRPGKCYRLCTESDFMKLRINTPPEMQRTDLASTVLQLKALGIDN
IVKFEFPSAPPSKNLISGLELLFALGAIDEKGSLTSPLGERMSEFPIHPNLSKMLLTSED
FDCSQEICAIVAMLQVEEVFIKKSSNANDWRIAKRNFEVSEGDLLTLLNVFNAFKKENES
RGWCQSHFLKYKVLRRASELYDRLIKTLKRYKIPIKLTTDTQTLLKCIVSGLFPNAAYLH
VSGSYRTVRGNIELSIHPTSVLYTVGLFLQS
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atgcattcgagaggattcctacgtcctcaagatgatgaggatgtattctcttcatggaaa
gtggaccggtcagacttggatccacttaaagaaacctccttcatatacaacgcaactcca
tctacttcaattcaagcccaaagagccaaacttccgatttccaaatatagggatcacatt
cattacctcttgtcccagaatcagactctggttgtggttggcgagacggggagtggaaag
tccactcaattgcctcagtttctctatgagtccgttgaaggaattgtgggaatcacagag
cctcgtcgagtggctgctacgactcttgctgatcgtgttgcgtctgaggttggaaaacca
gagattgttgggtattctgttcgctttgatgatcgctccaggaatgcaaaaatcaagtac
atgacagaagggnaattgattcgagaaatgatgggggatcctctgttgagtgactattcc
attctcattgttgatgaagcacacgaaagaacggttcatgtagacattttaatgggactt
cttaaaaaaattttaaacaagaggaaggacttgaaattgatcgtttcttctgcgacagtg
gatgcagaatttattagagatttctttgataattctgccattttgactgttgaaggatcc
agctactctgtggatgtattttacttgacaaatccttgtccagactatgttaaagaatgt
gctgaaacggcggtgaaggttcatgcgattgaaacgcctggagacattcttatattttta
acagggatggaggaagtggagagatgtacaagtttcttgaaagagtatgaagtttctatt
ggaaagtccaagcatggtctaaacatgtctatccttccaatgcacgggtcactcccatac
atggaccaattgaaagtatttagacctagtcaaaggggtcttcgaaaaataattgttgca
acaaacattgctgaaaccagtatcacaatagaagggatcgtttatgttatcgattcctgt
ttcgttaagctaaagtggtataatccggaaactaacattgattcacttattgttactgaa
gtctctcaagcctctgctgagcagagatccgggcgagcgggtagaacaaggccagggaaa
tgttatcgtctttgtacagaaagtgactttatgaaacttcgaattaacactccccctgaa
atgcaaagaacggaccttgcatctactgttcttcagttaaaggctcttggaatcgataat
atcgttaaatttgaatttccatctgctcctccatctaagaacttgatatccggcttagaa
cttttatttgctcttggagcaatcgatgagaagggatctcttacatctcccctaggcgaa
agaatgtcagaatttccaatccatcctaatttatcaaaaatgttgcttacttcagaggat
tttgattgctctcaagaaatatgtgctatcgttgcaatgcttcaagtagaagaagtattt
atcaaaaaatcaagcaatgccaacgactggcggattgctaaaaggaactttgaggtctct
gagggagatttgctcaccctccttaacgtattcaacgcatttaaaaaggaaaatgaatcc
cggggatggtgccaaagtcactttctaaaatataaagtccttagacgagcgagtgagctc
tacgatcgtctcatcaaaacacttaaacgctacaagatcccaatcaagttaacaacagat
acacaaacgctattaaaatgtattgtctctggattgtttccaaacgctgcatatcttcat
gtatctggatcttatcgcactgtacgaggaaatatagagttgtccattcacccaacttcc
gtcctgtatacagttgggttgtttttacagagttga
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