Lepeophtheirus salmonis (salmon louse): 121123491
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Entry
121123491 CDS
T08214
Name
(RefSeq) exosome complex component RRP42
KO
K12589
exosome complex component RRP42
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121123491
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsm03019
]
121123491
Messenger RNA biogenesis [BR:
lsm03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
121123491
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
121123491
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
121123491
NCBI-ProteinID:
XP_040574548
LinkDB
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Position
8:complement(3401517..3403543)
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AA seq
288 aa
AA seq
DB search
MASVVMGDAEKTFILEGIKENVRVDGRHRKDVRPIILETDIITHANGSARIRLANTDVLV
GVKADLTKDQPGGLAFYVDCSANASPEFEGRGGEDLATEISSTLATAYSDLRVFDTSILQ
VLKTRYSWVLCVDVLILEVGGGNLFDVSSAAVKSALFATKVPTVRILEMDGGVPEIELSD
DPDDGFRCDVSNAPVLVTLNRIGHFCIVDASPNEEACSSAAVVVAVTPIGKISSIRKIGS
GSFHPDTLEDALSTAKDVGINMNKALYDKLKEEEQLGSKRKEFGFLRE
NT seq
867 nt
NT seq
+upstream
nt +downstream
nt
atggcgagtgtcgtaatgggagacgcggaaaagacttttattctggaaggaattaaggaa
aatgttcgagtggatggacgacatcgtaaagatgttcgtcctataatattagaaacggac
ataataacgcatgccaatggttctgctcgaatcagattggcaaatacggatgtactcgtg
ggtgtgaaagcagacttgactaaggatcaacctggtggactcgcattctatgtagattgt
tctgcaaatgcatccccagaatttgaaggacgaggaggagaggatcttgctacagagata
tcctccacactcgctacagcctattcagacctacgcgtgtttgacacatccattttacaa
gtattgaagacccgttactcttgggtcctatgcgtggatgtactcatccttgaggtaggt
ggtggaaatctctttgatgtctcatctgctgcagttaaatccgctcttttcgcaactaaa
gtccccacagtacgcattttagagatggacggtggcgtacccgaaattgagctttcagac
gatccagatgatggatttcgatgtgatgtgtcaaatgcacccgttctagtaactctaaat
cgcattggacatttttgtattgtggatgcttccccgaatgaggaggcatgttcctctgct
gccgtggttgttgcagtgactccgattggaaaaatatcttctatcagaaaaatcggatca
ggttctttccatccggatacactggaagacgctctatctactgcaaaggatgtcggaatc
aatatgaacaaagctctatatgataaactcaaggaagaggaacaacttggatccaaaagg
aaggagtttggctttttaagagaataa
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