Lepeophtheirus salmonis (salmon louse): 121123639
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Entry
121123639 CDS
T08214
Symbol
spel1
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
121123639 (spel1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lsm03400
]
121123639 (spel1)
DNA repair and recombination proteins [BR:
lsm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
121123639 (spel1)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
AAA_27
Rsm22
Motif
Other DBs
NCBI-GeneID:
121123639
NCBI-ProteinID:
XP_040574710
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Position
1:23667611..23670488
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AA seq
768 aa
AA seq
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MVDVLDTRVESLVSLLVETLDSDEIHCGLSYMSEIGKTLRFLDFKDTIHLDYIKVALSQL
HPDKVIVTCEHTKTRNAVLKVLGIRGIKSVEIPIPSDDYDKDEITKRIKTLSNVYPFKVD
LKKTPLAFHSFKYLDANMCDDDEIPEQYEVSFHPLEEYMTLGERAIQSLDLFSDIPANLS
LYKLLNKCRTRGGERLLKDWIRQPLKNEESIRVRLDIVELFVDNTDLRDTLHNETLRKIP
DFENLSVRLAKKNCKLPQLFNIFTGVYETKKIIEQLEPLSEKCLKTNFLSTLKSNVDKMK
GYQAMINKSLDFEAIKDGEFFIRPTFDEGMVELRNQMKDLRGEMESENETVISDLEMDST
KHMRLEYSDTHGYHFRVTLKYELSLRDHEDNYNIIEAAKNGIKFQTKALTRMSEDYEAMK
AQYNVLQERILEEILDIAFGYSKFIFRIGQSISKLDVLVSFAVSALASPIPYIKPTIREP
SSHRIIKMMGVRHPILEIAACMSSYIPNDIHFDSMVNRFHILTGPNLGGKSTYMRSIAVS
LVMAQIGCFVPCDEAEFSIVDKILVRVGAEDRQFEGVSTFMAEMLDVANILRNATNQSLA
IIDEIGRGTSTYDGIGVAYAVADKIIREMNIFTIFATHFFELTELGDIHESVRNYHVSAD
TESGVFTLLYKVLEGKCNKSFGIEVAKLCKLPDKVIEESEEILEKYERNSSIGKMLNFDD
DQLIELENILESLPSGSEERKKCLKNVKENFFSEEKWKKLMDTIKSNQ
NT seq
2307 nt
NT seq
+upstream
nt +downstream
nt
atggtggatgtgcttgatactcgtgttgaatccttggtttcccttcttgtcgaaacattg
gactctgatgaaatacactgtggtttatcttacatgtccgaaatagggaaaacacttcgg
ttccttgattttaaggatacaattcatctcgactatataaaggtggctttaagccaattg
cacccagataaagtcatcgttacatgtgagcacaccaaaacgcggaatgctgttttaaaa
gtccttggtataagagggataaaatctgtcgaaataccaattccctcagatgactatgac
aaagatgaaattacaaagcggatcaaaaccctctccaatgtttatccttttaaagttgat
cttaaaaagactccccttgcatttcattcatttaaatatttagacgctaatatgtgtgat
gatgacgaaattcctgagcagtatgaagtttcatttcatcctttggaggaatacatgact
ctgggtgagcgtgccatacaatctctggatctatttagcgatattccggctaacctttct
ctttataaattactgaacaagtgtcgaacacgtggtggagagcgtttgcttaaggattgg
attcggcaacctttaaaaaatgaggaaagtatacgagtaagattagatattgttgagtta
tttgttgacaacacggatttaagggatactcttcacaatgaaactcttcgaaaaattcca
gattttgaaaatttgtcagttcgtttagctaaaaagaattgtaaactacctcaattattt
aatattttcacgggtgtatatgaaacaaaaaaaattatagaacaacttgagcctctctca
gaaaagtgcttaaagactaactttctcagcacattaaagtcaaatgtcgataaaatgaag
ggatatcaagccatgatcaataagtctcttgattttgaagccataaaggacggtgagttc
tttattagacctacgtttgacgaaggaatggtagagttgagaaatcaaatgaaggatttg
agaggtgaaatggagtcagaaaatgagacagtgatttcggatctggaaatggattctaca
aaacatatgagattggaatatagtgatacccatggttatcatttcagagttactcttaaa
tacgaactaagcctccgagatcatgaggataattataacattattgaagcggctaaaaat
ggtattaaattccagaccaaggcattaacgagaatgagtgaagactatgaagccatgaag
gcacagtacaatgtacttcaagagagaatccttgaagaaatcctcgacatagcttttggc
tattcaaagttcatatttcgtataggacaaagcatttctaaacttgacgttttagtttca
tttgctgtgtcagctcttgcatctcccatcccttatattaagccaactattcgtgaacca
agctctcatagaatcattaagatgatgggagttaggcatccaatcttggaaatagctgct
tgtatgtcatcatacatccctaacgacattcattttgactccatggtaaatcgatttcac
attctaactggaccaaatttgggaggtaagagtacttacatgaggagtattgcagtttct
ttggtgatggctcaaattggatgctttgtaccttgtgatgaagctgaattttccattgtt
gataaaattcttgtcagagtcggagcagaggatcgtcaatttgagggtgtttctactttc
atggcagaaatgttggacgttgccaacatactccgtaatgcaacaaaccagagtttagca
atcatagacgaaattgggcgtggaacttcaacatacgatggaattggcgttgcatatgct
gtagccgataaaatcataagggagatgaatatctttactatttttgctacccattttttt
gaacttacagaattgggggatattcatgaatcggtgaggaattatcacgtatccgcagat
acagagtctggtgtatttactttgttatataaagttttggaagggaagtgtaacaaaagc
tttgggattgaggtagccaagttatgtaagcttccagataaggtaattgaagaatccgag
gaaattttagagaaatacgaaagaaatagtagcatcggaaaaatgttaaattttgacgac
gatcaacttattgaacttgaaaatatccttgaatcgttaccttctggttcggaggaaaga
aaaaaatgtttaaagaatgtcaaggaaaatttctttagtgaagaaaagtggaaaaaatta
atggacactattaaatctaatcaataa
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