Lepeophtheirus salmonis (salmon louse): 121123965
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Entry
121123965 CDS
T08214
Symbol
Rs1
Name
(RefSeq) probable ATP-dependent RNA helicase DDX27
KO
K13181
ATP-dependent RNA helicase DDX27 [EC:
5.6.2.7
]
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lsm03041
]
121123965 (Rs1)
03009 Ribosome biogenesis [BR:
lsm03009
]
121123965 (Rs1)
Enzymes [BR:
lsm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121123965 (Rs1)
Spliceosome [BR:
lsm03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
121123965 (Rs1)
Ribosome biogenesis [BR:
lsm03009
]
Eukaryotic type
Pre-60S particles
Helicases
121123965 (Rs1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Utp25_C
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
121123965
NCBI-ProteinID:
XP_040574986
LinkDB
All DBs
Position
9:22130193..22133595
Genome browser
AA seq
790 aa
AA seq
DB search
MTSFSTDYKQINKFCYVITVLNTSTRVYLLHNRVLSFVCFEGIIANQSMELDDLIKTIED
GEEVENHSETDESDDEPVPIKKIVKKKQKNKGGTTIGEKGGLDFESDFNFVDNVKDYNKD
AWKDLMAKYVKKKRRNRTSVSERISNIRKERQEEKGYENESDKEESMSTSDDSCQELSDD
ELVADSLRIKQGELERKNRKKAKEGPLTPGIHMETEDVFFEEPPSYDENASFYAMNLSRP
LLKAIESLRYVHPTPIQASTIPVALAGRDVCGCAATGTGKTAAYMLPILERLLFRPNQSI
TRVIVLVPTRELGVQVYQVSKQLSQFTSIDIALSVGGLDLKAQELALRKNPDIVIATPGR
LIDHIKNTPTFGLENIEVLILDEADRMLDECFLEQMKEIVKSCSPKRQTLLFSATMTDKV
NDLSTMALRKPVKIFVDSNKVVAWNLRQEFVRIRANRESDREGILAALVCRTFRDHTIVF
IQTKVQCHRLLILLSLLGVRVGELHGNLSQPQRLESLKKFKEEEIDVLITTDVAARGLDI
SGVKTVINYTLPTTLEHYIHRVGRTARAGRAGRSVSIAGEGDRKMVREIVKNARDPVKAR
TVPQDIISKYVQKLESVRGDAQRISLEEKAERELANLENRTHQMENKLNSMDNPGMERTW
FQTPEQRKAEKRKIKEGKDDAKTVSNKKKKLQGAREELNEQDRESKQLRKEMEFQTREAK
RNRKTKKVRNVHYPEQDPVKKKSKKKGSSFENDLTSVGKKSVKLLRHKASAKINENFRSQ
KKKRDNKFRR
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcattttcaaccgattataaacaaataaacaaattttgctacgtcataacagta
ctaaatacatccacacgtgtgtatttgcttcacaatcgagtattgagtttcgtctgtttt
gaaggaatcatagcaaaccaaagcatggaattggacgatctcattaaaacaattgaagat
ggtgaagaggttgaaaatcattcagaaacggatgagtcggacgatgagcctgttccgatc
aagaagattgtaaaaaagaagcagaagaacaagggtggaactactattggagaaaaggga
ggtttggactttgaatccgactttaactttgtagataacgtcaaggactacaataaggac
gcatggaaagacttgatggccaaatatgtgaagaagaagaggagaaatcgaacctctgtg
agtgaacggatctctaacattcgtaaggagcgacaagaagagaagggatacgagaatgag
tcagacaaagaggaatcaatgagtacatctgatgactcctgccaagagttatctgatgat
gaactcgtggcggattctctcagaatcaaacaaggagaattggaacgaaagaatcgtaaa
aaggctaaggaaggtccactcactcctggcattcatatggaaactgaggatgttttcttt
gaagagcctccttcctatgacgaaaatgcctctttctatgccatgaacctttcacgtcct
cttctcaaggccatcgagtccctccgatatgtacatcccacgcctattcaagcatccacc
atacctgttgcacttgctggaagggatgtttgtgggtgtgctgcaactggaacaggaaaa
acggctgcttacatgctccctattcttgaaagactgttatttagacctaatcagtccatt
acacgagtcattgtcctagtgcccacccgagaattgggtgtacaggtttatcaagtgtct
aaacaattgtcacaatttacgtccattgatattgccctttccgttggaggtttagatctc
aaggctcaggagcttgccctcagaaaaaatcctgatattgtcattgctacgcccggacgt
ctaattgatcatattaaaaatactcctacttttggtttagaaaatattgaagttctcatt
ttggatgaggccgatcgtatgcttgatgaatgttttcttgaacaaatgaaagaaattgtt
aaatcctgctctcctaagagacaaacacttttgttttctgctacaatgacagacaaggtg
aatgatttatccacaatggccctcaggaaaccagtcaaaatttttgttgattccaacaag
gttgtcgcttggaacttgaggcaagaatttgttcgtattcgagcaaatagagagagtgat
cgagaaggaatcctcgctgctctagtctgccgtacctttagagaccatacaattgttttt
attcagaccaaagttcaatgccatcgcttactcattcttctgagtcttctgggagtgcgt
gttggagaactgcacggaaacttatctcagcctcaacgattagagtcacttaaaaaattt
aaagaagaagaaattgacgtattaatcacaacggacgttgctgctcggggtttagatata
tctggtgttaaaaccgtcatcaactacacacttcccacgacgcttgagcactatattcat
cgtgtcggacgtacagctcgagctggacgagcaggacgctctgtctcaatagctggggag
ggggatcgtaaaatggtgagggagatcgttaagaatgctcgagatcccgtcaaggcccga
accgttcctcaagatatcatcagcaaatacgttcagaaattagagtccgtccgtggagat
gcacaacgcatatcattggaagagaaggcggagagagagcttgctaatcttgagaacaga
acccatcaaatggaaaataaattaaattctatggacaaccctggaatggagagaacgtgg
ttccagacaccagaacagaggaaagcagaaaaaaggaaaatcaaagaaggaaaggatgat
gctaagactgtttccaataagaagaagaaattacagggagctcgtgaggaactcaatgaa
caggatagagagagtaaacagcttcgaaaagaaatggagtttcaaactcgagaagccaag
agaaaccgcaaaacaaaaaaggttcgtaatgttcactatccagaacaagatcctgtaaag
aagaaatcgaagaaaaagggttcttcatttgaaaatgatttgacctctgttggaaagaag
agtgttaagctactaagacataaggcctctgctaaaatcaacgaaaacttcaggagtcag
aagaaaaagcgtgataataaatttaggcgttga
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