Lepeophtheirus salmonis (salmon louse): 121124020
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Entry
121124020 CDS
T08214
Symbol
su(f)
Name
(RefSeq) cleavage stimulation factor subunit 3
KO
K14408
cleavage stimulation factor subunit 3
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121124020 (su(f))
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsm03019
]
121124020 (su(f))
Messenger RNA biogenesis [BR:
lsm03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
121124020 (su(f))
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
TPR_14
HAT_Syf1_CNRKL1_C
NRDE-2
SesA
TAGT
Motif
Other DBs
NCBI-GeneID:
121124020
NCBI-ProteinID:
XP_040575047
LinkDB
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Position
9:complement(1008009..1025847)
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AA seq
731 aa
AA seq
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MMNIAPHRLRDAERRIEDDVYDMEAWQLVIKDAQSKKAEKCREIFEEVLKTFPTSGRFWK
MYIEQEMRSRNYEKVEKLFQRCLMKIMNIELWKTYLLYVKDTKINLSSYKEKMAQAYDFA
LEKMGIDIASYPLWNEYIKFLKGVEAAGSYAENQKITAIRKIYQKGIVNPMVNIEVLWKD
YVAFEQGINPIIAEKMTSERSRDYMNARRVSKEYEACTRGLVKTAPCVPPSSSIAEQKQV
EYWQKYINWEKSNPLRVEDQIIIAKRVMFAYEQCLLCLAHHPNIWYEAALFLQDSSRILA
EKGDVDSSKSFLDQASAFYERGISGVLNKCMLLHFAYADFEEQRMKYEKVHKIYLKLLEH
KDIDPTLCYVQYMKFCRRSEGIKSARAVFKKAREDDSTGHQIYASAALMEYYCTKDKDIA
VKIFELGLRKFQNNKEYILAYIDYLSHLNEDNNTRVLFERVLTSGQLPSEDSAEIWSKFL
EFESKIGDLASIIKVERRRTQVLDSIGQQKTNSYVGSDPNNLLPDGHPANPTNNETIQLI
DRYRFMDLYPCTKDELRSLGYQNKTLDPELVLSQTNINSNSISGVAETENVARPDVSQMI
PFKPKSRWVPGEHPMPGGGFPLPPSVSDLCQLLPPPSSFNGPFVIIDRMLDIFKNIQLPD
SFQANSSQNGHDVKLFDMAKSVHWVMDSSSGENGRKKRKSLLRGDESDEEEDSSNTPVND
IFRLRQQKRMK
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atgatgaatattgctcctcatagacttcgagatgcggaacgcaggattgaagatgacgtc
tatgatatggaggcctggcaactcgtcatcaaggatgctcaaagcaagaaggctgaaaag
tgtcgggaaatatttgaagaagttttaaagacctttcctacgagtggacgcttttggaag
atgtatattgaacaggagatgcgttctcgaaattatgaaaaagttgaaaagttgttccaa
cgttgtttgatgaaaattatgaacattgaattatggaagacatatctactgtacgtcaag
gatacgaagatcaatttatcgtcctacaaggaaaaaatggctcaagcttatgactttgcc
ttggaaaagatgggaattgatattgcttcatatcctctctggaatgaatacattaaattt
cttaaaggcgtcgaagctgcaggatcatatgctgaaaatcaaaagatcacagctatcaga
aaaatatatcaaaaggggatcgtgaatccaatggtgaacattgaggtgttgtggaaagac
tatgttgcattcgaacagggaatcaatcctatcatagctgaaaaaatgacttcagaaaga
agtcgtgattacatgaacgcaaggagagtttccaaggagtatgaagcctgtacgcgagga
cttgtaaagaccgcaccttgtgttccaccttcctcctcgattgctgaacaaaaacaagtt
gaatattggcaaaaatacattaactgggaaaaatcaaatcctcttcgagttgaagatcag
attattatcgctaaaagggtcatgtttgcctatgaacaatgtctgctatgtttggctcat
catccaaatatttggtacgaagcagcgttgtttttacaggacagttctcgcatattagcc
gaaaaaggggatgtcgattcaagcaagtcatttttagatcaggctagcgctttttacgag
cgtggcatctctggtgttctaaacaaatgtatgctccttcattttgcatatgctgatttc
gaagaacagagaatgaaatacgaaaaagtccataaaatctacctcaagttgctcgaacat
aaagacatcgatcctacactgtgttatgtccaatatatgaaattttgtcggagatcggaa
ggtattaaatccgctagagctgttttcaaaaaggcaagagaagatgactcaacgggtcat
caaatttatgcatccgcagcactaatggaatattattgcactaaagacaaagacattgca
gttaagattttcgagttaggattgcgaaaatttcaaaacaacaaagaatacattctagca
tatattgattacctctcacatttaaatgaggataacaatacaagagtattatttgaacgt
gtacttactagtggccaactgccttcagaagattcagcagaaatatggagtaaattcttg
gagtttgaatcaaaaattggcgatttagctagtattatcaaagtcgaaagacgtagaaca
caagttttagattccattggtcaacaaaaaactaattcctatgtgggaagtgatcccaac
aatctactcccagatggtcatcctgcgaaccctaccaacaatgaaactattcaattaatt
gatcgttaccgattcatggatttatacccatgtacaaaggacgaactgaggtcccttggg
taccaaaataaaactttagatcccgaattggtgttatctcagacaaacataaacagcaat
tcaatttctggagttgccgagactgaaaacgtagcaaggccagacgtgtcgcaaatgatc
cctttcaagcctaaaagtagatgggttcctggtgaacatccaatgcctggtggtggattt
ccattacctccatctgtcagtgatctttgccaacttcttccacctcctagttcctttaat
ggcccatttgtcattatagatagaatgttagacatttttaaaaatattcaactgcctgat
agttttcaagcaaattcctctcaaaatggccatgacgtcaaactttttgatatggctaaa
tccgtacattgggtcatggactcatcttcaggagagaatgggaggaagaaaagaaagtca
ttacttcgtggagatgaatctgatgaagaagaagactccagcaacacacctgtcaatgat
atttttcgtctgcgacaacaaaaacgaatgaaataa
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