Lepeophtheirus salmonis (salmon louse): 121125145
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Entry
121125145 CDS
T08214
Name
(RefSeq) ATP-dependent RNA helicase p62
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121125145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lsm03041
]
121125145
03009 Ribosome biogenesis [BR:
lsm03009
]
121125145
Enzymes [BR:
lsm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121125145
Spliceosome [BR:
lsm03041
]
Complex A
U1 snRNP components
U1 related factors
121125145
Complex B
121125145
Ribosome biogenesis [BR:
lsm03009
]
Eukaryotic type
Pre-60S particles
Helicases
121125145
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
AAA_19
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
121125145
NCBI-ProteinID:
XP_040576214
LinkDB
All DBs
Position
10:20829856..20832420
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AA seq
508 aa
AA seq
DB search
MIGLIRSTRITCRYFTERKFRSLCTIVPPSFEHDDDGRGPPEVTPPHAPSQIRTPEEIRS
FREKNRIVVKGVDTDPVFSFQETGFPLGLIERIKSHGFEAPTAIQAQGWPIATNGKNIIA
IGETGSGKTLGFVLPGLCHLMRQPPRRNRGDGPVVLIIAPTRELAEQIHNVVDGFASKIP
TACLVGGNHKQGQIRDLNRGAEIVVATPGRLIDLMEDGDVDLKRCSYMVLDEADRMLDMG
FEPQIRKIMRQVRPDRQLLMWSATWPSEVQSLAHDFFGGTDYAHVNIGSSELQANKLIMQ
DFKFCERFEKMDSIKEILESLSEVESKKVLIFAATKIRVDQLVRKLKYWNFVVDGIHGDK
TQAMRTRALDKFRSGRINILVATDVASRGLDVNDIKVVINYDFPNNIEDYVHRIGRTGRC
SKEGKSFSFFDEVEDGSKAKDLINVLKEAHQSIPHKLQEISRMSYKPKKKQFKSNFNRRN
SYDDDFYNGTWRKRRENNRNRRYSEDFQ
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atgattgggttgattcggtcaacgagaatcacgtgtagatatttcacggaaaggaaattt
cgaagcctatgtacaattgtacccccgtcatttgaacatgatgatgatggcagagggcct
cctgaagtgacaccccctcatgctccgtctcaaattagaactcctgaagaaattcgttca
tttcgagagaaaaatcgtattgtggtcaaaggtgtggatacagatccagtctttagcttc
caagaaactggatttcctcttgggctcatagagagaattaagtcacatggatttgaggca
ccaacggccattcaagcacaaggttggcccattgctacaaatgggaaaaatataatcgcc
ataggtgaaacgggctctggaaaaacacttggatttgtattgccaggtctatgtcatttg
atgcgacaacctccgagacgtaatagaggagatgggcctgtcgttcttattattgctcct
actcgtgagctagcggaacagatccataatgtggtagatggttttgcatccaaaattcct
actgcttgtttagttggagggaatcataaacaaggtcaaatcagggatctaaacagagga
gcggaaatagtcgtggcaactcctggacggcttatagatttgatggaagatggggatgtg
gatttaaaacgatgttcttatatggtactagatgaagcggatagaatgttagatatgggg
tttgagcctcaaatacggaaaatcatgcgtcaagtaaggccagatcgacaattactcatg
tggtccgccacttggccttcggaagtgcaatctctagctcacgacttttttggaggtaca
gactatgctcatgtcaatattggttcctcggagctacaagccaataaattgattatgcag
gattttaaattttgtgaacgttttgaaaagatggattcaattaaggaaatacttgaaagc
ttgagcgaagtagaaagcaagaaagttctaatttttgccgcgaccaaaataagggttgat
caattggtaagaaaattgaaatattggaattttgttgtggatggaattcatggagataag
actcaagccatgaggactcgagctttggataaatttcgttcaggaaggataaacatactc
gtagccacggatgttgcatctcgtggattagacgtaaatgatatcaaagtcgttataaat
tatgactttccaaataacattgaagactatgttcatcgtattgggcgtacaggtcgttgt
agcaaggagggtaaatctttttcattctttgatgaagtcgaggatggaagtaaggcaaag
gatttgatcaatgttttaaaagaggctcatcagtctattcctcataaacttcaagaaatt
agccgtatgagttataaacctaagaaaaaacagtttaaatccaattttaatagaagaaac
tcatatgatgatgacttttataatggtacatggaggaagcggagggaaaataacagaaac
cgtcgatattcggaggattttcaataa
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