Lepeophtheirus salmonis (salmon louse): 121125612
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Entry
121125612 CDS
T08214
Name
(RefSeq) ATP-dependent RNA helicase DDX55
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lsm03009
]
121125612
Enzymes [BR:
lsm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121125612
Ribosome biogenesis [BR:
lsm03009
]
Eukaryotic type
Pre-60S particles
Helicases
121125612
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
CTT_SPB4
AAA_22
Motif
Other DBs
NCBI-GeneID:
121125612
NCBI-ProteinID:
XP_040576735
UniProt:
A0A0K2VDN7
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Position
1:complement(33878479..33881006)
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AA seq
603 aa
AA seq
DB search
MGNGEESELMDDWSVLPLKSKVILDVIHNDLKFKKMTPIQATAIPLFLGLKDVCAEAVTG
SGKTLAFVIPILEILLNSSNEESKVHDIGALILSPTRELASQISQVLEVFLSKIPSLNSL
LIIGGGGSSSVGETLRKFEKEGAKIIIATPGRLEDILTGKTESINQLKAEKMARGFKSTK
ILILDEADRLLSLGFETAINTIISFLPKQRRTSLFSATQTKDLDELIRAGLRNPVLVKVK
EHGKENELSTPIKLTNYYMKCDPPAKKFATLLKFLKTEAAGKKTMVFFSTCACVEYFSTL
LERFLKDDNTPVFALHGQKGGTRFKIFDKFKKLDMGVLVCTDVLSRGVDFPDVEWVVQFD
APKTAEAFVHRIGRTARSGAVGNALLLLLPTEDSYIDFIKINQKVDFDKMEVITGLPKTL
PVIRNWLLHDRDLMEKGIKAFVSYVRAYSKHECKYILKVKDLPFGELASAYGLLKMPKMP
ELKKIKVTGFIPEKVDLNSIKYKEKLREDSRQKKLKIYKESGKWPGMKEHLSDTQAWSRN
VERQDRKKLRHLVSEKKRREKEKISQEDEDDLEKDFRLLKKLKKGKVSQKEYDDDIKLES
DGE
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atggggaacggcgaagaaagtgaattaatggacgattggagtgtattaccccttaaatcc
aaagttattctagatgtgatccataatgatcttaagttcaagaagatgacaccgattcaa
gctaccgccattccattatttttgggcctaaaggatgtttgtgctgaggctgtgacgggg
agtggaaaaactttagcctttgttattcctattctagaaatccttttgaattcatctaat
gaagaaagtaaagtccatgatataggggccttgattttgagcccaacgagagagttggca
tcccaaattagtcaagtattggaggtatttttatccaaaatcccttctttaaactctctc
cttatcattgggggcggaggttcttcgagtgttggagaaactcttcgaaaatttgaaaaa
gaaggagcaaagattattatagctactccgggtcgtttggaagacatacttacggggaaa
acggagtccattaatcaattgaaagctgaaaaaatggcaagaggattcaaatctacgaaa
attttgattttagatgaagcggatcgcctcttaagcttaggttttgaaacagccattaat
acaatcatatcctttttacctaaacaaagaagaacctccttattttctgcaacacagacg
aaggatctagatgaactcatccgtgctggactccgcaatccagttttggtcaaagtcaag
gagcatggtaaagaaaatgagctctctactccaatcaaactcacaaattactacatgaaa
tgtgatcctcctgcgaaaaagtttgctactctactcaagttcctcaagactgaggctgct
gggaagaagacaatggtattcttttctacttgtgcctgtgttgagtatttctccacttta
ttagaaagatttcttaaggatgataacactcctgtatttgccttacacggacaaaaagga
ggaacgcggttcaagatatttgataaatttaaaaagttagatatgggtgttttggtatgt
acggatgttttatcgcgaggagtagactttcctgacgtagaatgggttgttcagtttgat
gctcctaaaacggctgaagcatttgttcatcgcattggaagaactgctcgtagtggtgca
gtggggaatgctttgcttctactccttccgactgaagattcctatatcgattttatcaag
ataaatcaaaaagtggattttgataaaatggaagttatcacgggtttacctaagacactt
cccgtgattcggaattggttattacacgatagagacctaatggaaaagggaattaaagcc
tttgtgtcatacgttcgagcttattccaagcatgaatgcaaatacatccttaaagtaaaa
gatctcccttttggagaacttgcatctgcctatggtcttcttaaaatgccgaaaatgcca
gagttaaaaaaaatcaaagtcacaggatttattcccgagaaagtcgatctcaattccatt
aaatataaagaaaaactacgtgaagattcccgtcaaaagaaattaaaaatctataaagaa
tctggtaagtggcctggaatgaaggaacacttaagcgatacccaagcatggtcaaggaat
gttgagcggcaggatcgtaaaaaacttcgtcatttagtgtcagagaagaaacgaagggaa
aaggaaaaaatatcgcaggaggatgaagatgacttagaaaaggattttagactgcttaaa
aaattgaagaagggcaaggtatctcaaaaggaatatgatgatgatatcaagcttgagtct
gatggagaataa
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