Lepeophtheirus salmonis (salmon louse): 121125814
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Entry
121125814 CDS
T08214
Name
(RefSeq) poly(A)-specific ribonuclease PARN
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121125814
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsm03019
]
121125814
Enzymes [BR:
lsm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
121125814
Messenger RNA biogenesis [BR:
lsm03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
121125814
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Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_NFXL1
Motif
Other DBs
NCBI-GeneID:
121125814
NCBI-ProteinID:
XP_040576988
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All DBs
Position
11:complement(14426229..14428518)
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AA seq
581 aa
AA seq
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MLKRLSRGLYRFLRQPNNYLSRRKKEKIKMDVTKRNFDEGLLNQIREELDSCSFVSFDCE
FSGIHAESNVCSLDSLSERYEKTIRPSITQFIVFQFGLSIFSPGSISGTLKNRSYNFHVW
QGSSVPSMDVRFLCQSSSIDFLAGQNFDFNKLFKEGISYIRLSDASRLKQNLIEKQNTKL
DYPSSIAIPEQQEDFLKDIHQRIQKYISDDKEEEAPLELPSCNGFQRKLIYQTVRETFGQ
EVYLETNKKRMLLVNKLRSREKNQQLELEEFDKILGFSKIVRIISESKKPLVGHNMMLDL
CFTINQFVAPLPETYEEFKTLAHKMFPEVYDTKVMANIGPVKEHVLNSTLEDLVAKLKES
PFKIPKLESKDDAYAESGLYHEAGFDAYITGLCFLGMKDYLIRQMSSSEDKSKIVLPYSN
KIAVMRINDVPYLNLDGDDIVPDRSHVFYVTFPSLWKTTDLNSLFSSFGNVQISWLSDTS
AYVSLYQKNLAGSVMDSLNCSSVYSLTPYDKHKNGNVPSSITPLLEKSDIFNTSNLSSPT
NNTKKRAVSPNGTPDASLKRSKSKPEAPSTLNIFPESSTWD
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atgttaaaaagattatccagaggactctatcgatttttgagacagcctaataattatctt
agtagacggaagaaggagaagatcaagatggatgtgacaaagaggaactttgacgaagga
cttttgaatcagatccgagaagagctggactcttgttccttcgtgtcctttgactgcgaa
ttttcggggattcatgcagagtctaatgtgtgctccttggacagcctttccgagcggtac
gaaaagacgattcgtccctccatcactcagttcatagtctttcagttcggactctccatt
ttcagtcctggctccatttctgggacgttgaagaatcgtagttataacttccatgtctgg
caagggagttctgttccctccatggatgttcgatttctctgtcagtcctcgagcatcgac
ttccttgccggccaaaactttgattttaacaaattgttcaaggagggcatttcctacatt
cgactctcggacgcctccagactcaaacaaaacctcattgagaagcagaacacaaagctg
gactacccctcctccatcgctataccagagcagcaggaggattttttgaaggatatccat
caacgcattcaaaagtacatatccgatgacaaagaagaagaagctccattggagcttcca
agctgtaatggatttcaaaggaaactcatctatcagacagttcgagaaacattcggacaa
gaagtctatctcgaaacaaacaaaaagagaatgctcttagtgaacaaattacggtcgcga
gaaaagaatcaacaattggagttggaggaattcgataagatccttggttttagtaaaatt
gtccgtattatatccgaatcaaagaagcccttggttggacataacatgatgttagatctc
tgcttcacaatcaatcaatttgttgctcctcttccagagacctacgaagaattcaaaacc
cttgctcacaaaatgtttcctgaggtatatgataccaaagttatggcaaacattggccct
gtcaaggaacatgttctaaattccacgcttgaagatttggttgccaaattgaaggagagt
ccttttaaaattccgaagctggagtccaaggacgatgcttatgcagagagcggtctttac
cacgaggcagggtttgacgcttacataacaggactatgtttccttggtatgaaggactat
ttgattaggcaaatgtcttcctctgaagataagtctaaaatcgtgcttccttattcgaat
aagattgctgtaatgcggatcaatgatgtaccttatttaaatcttgatggggatgatatt
gttccggatcgttctcacgtgttctacgttacatttccatctttgtggaaaactacggac
ttgaattcacttttttcttcctttgggaatgttcaaatcagttggctcagtgacacatct
gcttatgtgtccctctaccaaaagaatctagcaggctccgtcatggactctctcaactgc
tcctccgtctattctttaactccctatgacaaacacaagaatggaaatgttccctcgtcg
atcacacctcttcttgaaaagtcagatatttttaacacttcaaacctctcatcccccacc
aataatacaaaaaagcgcgcagtatccccgaacggaacaccagacgcctctctcaaacga
tcaaaaagtaagcctgaagcaccatccactctaaatatcttccctgaatcctccacttgg
gattaa
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