Lepeophtheirus salmonis (salmon louse): 121125931
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Entry
121125931 CDS
T08214
Symbol
rdgB
Name
(RefSeq) protein retinal degeneration B isoform X1
KO
K24069
membrane-associated phosphatidylinositol transfer protein
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lsm04131
]
121125931 (rdgB)
Membrane trafficking [BR:
lsm04131
]
Endoplasmic reticulum (ER) - Golgi transport
Others
Others
121125931 (rdgB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IP_trans
LNS2_PITM1-3
PITM1-3
DDHD
UK
APP1_cat
Acid_phosphat_B
Motif
Other DBs
NCBI-GeneID:
121125931
NCBI-ProteinID:
XP_040577125
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Position
11:complement(17326506..17400771)
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AA seq
1280 aa
AA seq
DB search
MLIKEYRIPLPMTVDEYRIAQLYMIAKKSRDESSGTGSGVEILINEPYSNGPGGSGQFTH
KIYHVGSHLPGWFKSLLPKSALIVEEESWNAYPYTKTKFKCPFVEKFSLEIETYYTPDGG
HLENVFNLTDSEKRNRSVDLIDVVNDNQDVIFGEPEKEDPTIYISSKTDRGPLSSDWIQT
YWDEVKSDPLQRQPTPSGKSIMCAYKLCKVEFRYWGMQSKIERFIHDVALRKTMLHAHLQ
AWIWQDEWFGLTMEDIRAIEAETAELLKKTMHAADPDAIPSEQTDDCHNVHNNPSNEHKL
TNNANSSATLNSSDSSQDMRAKFKGIEYGDKDIPDILPKQQQKQPHSSAKIPPQPPPRHK
MEIPKSCSNHTSPMEACEQGDSDEEFFDCREEINDTVSLAKWSSMELPPMNEDESSGGGV
GDMLKVENTQHHVSFRRVNSLRSNNNDNNDYIPVNRTLSSGSTSTCPTTLLIFVMHGGSV
LDPCVDLSVRKSDVTTFRGALESIMRTHYPSLVGHVTIKSIPCAAVCSEALAVLSSLSPY
SFDVNTTNGDFGISNDRLPVGTIPLFATCSPEYENAVTKVIKSANDAYKEFMHSEEGQGF
FGQTVIVGDSVGSILAYDALCRSVKRAYSDSSVAGDDMLLSSGKEDVRKVDSLSSTTYSD
SNEDYQQSRSHLSTPQVQCSRKACDIYEERCSRLDFEVSDFFTFGSPLGILLAYRKIQQQ
TSNHSIHPYSIPRPAVQQMYNLFHPSDPIACRIEPLLSARFSRVPPVNVSRYQKYPMGDG
TCLSLIEFIQSNPGIFGVDNSRPTTPGKSRRLSEDSIVSGVLDTQQLHTINILKPKWWGS
RRIDYALYCPEGLANFPTSCLPHLFHSSYWESSDVISFILRILVRGEPLTTHESNPLEHH
QFTPTQPREKWIKKRTSVKIRNGAANHRGNDVVVKEGIPQVLQARFSYGPLDMSALTGEK
VDIHIMKDPPGGDWLYLATELTDKNGRLSYTLKEQMGYGIYPVRMLVRGDHTMLHMYLAV
VPPYTECVVFSIDGSFAASVSVTGKDPKVKPGAVDIVRHWQELGYVIVYVTARPDMQLQK
VVSWLSQHNFPHGLVSFADGFTTDPLRHKADYLRNLIEIHSVVIHRAYGSNKDISVYSGI
GLKPEQIYVVGKPSKKQVGAGTWLLEGYADHLAELTSRGGSRTAQGNARMVIPKAIFGLP
GQKSSGGLTRRRTLRPSAKRTISYPVNSETSNTSSNNSPTPSSHNYNTLPSYSANSERIT
TYNEECIEQYFKLLLVLHHK
NT seq
3843 nt
NT seq
+upstream
nt +downstream
nt
atgctaattaaagagtaccgaatccctctaccaatgacggtagatgaataccgcattgct
caactctacatgattgctaaaaaaagccgtgatgagtcctcgggcacgggctccggagtc
gaaatcctaataaacgaaccctattctaacggtcctggaggttctggacaatttactcat
aaaatataccatgtaggaagtcatctccctggatggttcaaatccttacttccaaagtca
gccttgattgtggaggaagagtcatggaacgcatatccctacaccaaaacaaagttcaag
tgtccttttgttgaaaaattttcactagaaattgaaacgtattatactcctgatggtggt
cacttggaaaacgtatttaacttaactgactctgaaaaacggaatcgttctgtggatttg
atcgacgtagtcaatgacaatcaggatgtaatctttggcgaacctgagaaagaggatcct
acaatctacatttcctctaaaacagatcgaggacccctttcttcagactggattcaaaca
tattgggatgaagtcaaatcggatcccctgcaacggcagcctaccccctccggaaaaagc
attatgtgtgcctataaactctgtaaagttgaattcagatactggggaatgcaaagtaaa
attgagaggtttattcatgacgtagcattgaggaaaacgatgcttcacgctcacttacaa
gcttggatttggcaagatgagtggtttggtcttactatggaggacatacgagctattgag
gcggaaacagcggagcttctaaagaaaacaatgcatgctgccgatcctgatgcaattccc
tcagagcagactgatgattgtcacaatgtacataataatccttcaaatgaacacaagttg
accaataatgcaaatagcagtgctacactcaatagttcagactcatcacaggatatgaga
gctaagtttaaagggattgagtatggtgacaaagacattccagatattttaccaaaacag
cagcagaaacagcctcatagtagtgccaagattcctcctcaacccccgccaaggcataaa
atggaaatcccaaagtcttgctccaatcatacaagtccaatggaggcttgcgaacaagga
gactctgatgaagagtttttcgattgtcgagaagaaataaatgatactgtttccttagcc
aaatggagctcaatggaattaccccccatgaatgaggatgagagctcaggtggtggtgtt
ggtgatatgctcaaagtagaaaatacccaacatcacgtctcatttcgaagagttaactca
cttcgatccaataataatgataacaatgattatatccccgttaatcgaacactttcatca
ggatcaacttctacttgcccaactacacttttgatctttgttatgcatggaggatccgtt
cttgacccctgtgtggatttatccgtcagaaaatcagatgtcacaacgtttcgaggagca
ttagagtccatcatgagaactcattatccttctttggtaggtcatgttacaataaagagt
attccctgcgctgccgtgtgttcggaagccctagcagttctttcaagtcttagtccttat
agttttgatgtcaatacgacaaatggagactttgggatttccaatgatcgactccctgtc
ggaaccattccgttatttgccacatgttctcctgaatatgagaacgccgtaaccaaagtc
atcaaatcagccaatgatgcttataaggagttcatgcattctgaagagggtcaaggattc
tttggacagaccgttattgtgggcgactctgtgggatccatcttagcttatgacgccctt
tgcagaagtgtcaagagagcttatagtgattcatccgttgctggagatgatatgctactt
tcctctggaaaagaggacgttcgcaaagtggattccctttcatccacaacttattctgat
tctaatgaagactatcaacaatctcgatctcacctatctactcctcaagttcaatgttct
cgaaaggcatgtgatatttatgaagaaagatgctcccgtttagattttgaagtatctgat
tttttcacatttggaagtcccttaggaattcttcttgcgtatcgaaaaattcagcaacaa
acctcaaatcattccattcatccttacagtataccacgccccgccgtccaacaaatgtac
aatctatttcatcccagtgaccccattgcttgtcgaatcgaaccactactttctgctcga
ttttcaagagttcctcccgtaaatgtatctcgataccaaaagtatcctatgggcgatgga
acatgtctatcacttattgagtttatacaatcgaatccggggatttttggtgttgataat
agtcgtccaacgactcctggtaaaagtcgtcgcctctcagaggatagtattgttagtggc
gttttggacactcagcaactacataccatcaatatactaaagccaaagtggtggggcagt
aggaggatcgactatgccctctactgtcccgaaggtcttgcaaatttccctaccagctgt
cttcctcacttatttcattcctcctattgggaatcatctgatgtcatttctttcatacta
agaatacttgttcggggagagcccctaactacccatgaaagcaatcctcttgagcaccat
caattcaccccgactcagcctcgagaaaagtggataaagaaaagaacaagtgtcaaaatt
agaaatggagctgccaatcatcgcggtaacgatgttgtagtcaaagaaggaattcctcaa
gtgctacaagctcgattcagttacggacccctggacatgtctgctctcactggagaaaaa
gtcgatattcatattatgaaagatcctccaggaggtgattggctttacttggccacagaa
ctcactgataaaaatggtcgtctttcgtacactctcaaagaacagatgggctatggaatc
tatccagtccgtatgcttgttagaggagatcacacaatgcttcatatgtacctagccgtt
gttcctccttatactgaatgtgtggttttcagtattgatggatcttttgcagcaagtgta
tcagtaactggaaaagacccaaaagtaaagcctggagctgtagatattgttcgccactgg
caagaacttggatatgtgatagtttacgtaacagcaagaccagacatgcaattacaaaaa
gttgtttcatggctctcgcagcataactttcctcatggccttgtttcctttgccgatggg
ttcacgacggatcctctgagacacaaggccgactatctccgaaaccttattgaaattcat
tcagttgttattcatcgagcatatgggagtaacaaagacatatccgtctactctggcatt
ggtctcaaacccgagcaaatatacgttgtaggaaaacccagcaaaaaacaagtgggagca
ggaacttggcttctagaaggctatgccgatcatttagcagagctcacatcaagaggtggc
tcacgaactgcgcaaggaaatgcaaggatggtcatacctaaagctatttttggacttcca
ggacaaaagtcaagtgggggactcactcgaagacgtactctgaggccttctgcaaaaaga
accatatcctatccagtcaacagtgagacaagtaacactagttctaacaacagccccact
ccctcatctcataattataatactctgccatcatactcagcaaattcagaacgaataaca
acctataatgaagaatgtatcgaacaatacttcaaacttcttctcgtcttacaccacaaa
taa
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