Lepeophtheirus salmonis (salmon louse): 121125945
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Entry
121125945 CDS
T08214
Symbol
Gapvd1
Name
(RefSeq) LOW QUALITY PROTEIN: GTPase-activating protein and VPS9 domain-containing protein 1
KO
K27566
GTPase-activating protein and VPS9 domain-containing protein 1
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lsm04131
]
121125945 (Gapvd1)
Membrane trafficking [BR:
lsm04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
121125945 (Gapvd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS9
RasGAP
DUF5601
Motif
Other DBs
NCBI-GeneID:
121125945
NCBI-ProteinID:
XP_040577148
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All DBs
Position
11:5650370..5658332
Genome browser
AA seq
1499 aa
AA seq
DB search
MGSKSVCHTRSELLELCRHLRQEKLFVENEKASLRDLNERVKKASQDLALSAWTARAQRV
NLDELLLKAGDPSSSVLRANLVKKTHFQDAYKMLQHHEILYTEFLKTLRQKPKLLGQVLS
VGCKRNIPGLEEVECATFSGLYGSCFMAEDEVLTLELLHHLMSAQLASSPNPRKILRAGK
CSFSRIYKSFIEEIFSTKLFLTTALFEPILSLLTEDEIFLDIDPSKALIRFPPSERKKKF
GIEGTPEYQKRLKDHREFIIKKLENITRKFINGIQDNIRSFPPSLSRLLRAMYSLLIKSF
ELKEVHAICFDAIFYLFICPAIVDPNPVGIIDTPVSYIARSNLMQVAHILQVLCMQKWEE
IDPKHMDLFSRFDKDSMSSIFENILELGLSNNEESIRKPLTESNTFAGMGMSAGTAAASN
FGFNDGSKLSRLAVLMTKSQLNQLVLFLRHIRDINNENKCDNLLPSSMANELTALLAPLP
EIIPGGLNGVHENKMEEIPVSKSSQSKNSLSARLSAMKNGSNSHRVTPLENNFHHRLHQE
ADNVLVIPLFDPSTSYDLPGLLSEEQVLSRSRQNSRVRMTLPNSDGSGNEVLEKRTRFSL
SQDEGSIGNTSDNLEAISEAASNHSATSSLEDGDDQEDEDNPIIDNLSDMVSANVSGRGT
PNVSGRDTPSSQVEGVPDDDEVIRSGRNEGEEDEARGAIGGMVGLRTGQASRGHRHIPPN
KSGQADLEEKFGRFEIKPQIKSRGSGVGLAGEGGDETVSLISDTWSTDVLASDTETLGEI
LTTSSDRFPHNNQNFADMDPFSRNLILEEFATSSSAGAAAALPQRMSGIQPSMPSDSTSV
NLLDVGDTASEAWSIDVLDGDRESLCLGELDIEYISSTVSAEDNQYMEGISQSGRNTDIL
LVDDNSPVANRAEARGNNLSRPSRDAAIEQWACSSGVGNIEHQDGAIRRGSDSSSSAAVA
AQSPTSSKLPLGMEKAPLEDPNQATLSSHLSAASIASSSGSSGDAADSNINASSRKNVLV
PSSSTGAIPKCANPDKKSGRSEKFSFKNWKLPKISRSRSSVESLRSSSDKCFSSHSNSLD
NPSHSVDGPPLGSLQRSHESSDDILNKYRNKKPVAVGNLIDITDSLAEEEVDPRLIIDHN
NLENCYAFQDAKRKLRLTLSSVDLSMMPDICHASSVEPEVIWLLKVQLSEALNLQDRNFI
AQLHETLRCLSLFKKDGVSRILNSLKEEYKRRAPYMAYLVRCRQGLLCTLSRQERLLSRM
NIDRDVCASYLVYVVVRIFLENREKRLHHFVQEFKELTVPDEKTALMNSFLALMNKELEH
DPIWSSVCSTEQLKLSNIAIERSITSHIYFHAMYPNGEADINRDEVLSEHIRKLGEIITP
SHKCLRIPRQYHYEQPWPSAQAEIRRLAAFKTPADKVSCIKRASQTIMNLLSLGSSKGVP
AADDFIPVLVFILIKANPPSLLSTVQYVENFYGERLCGEDEYWWVQTVSAIEFIKTMDY
NT seq
4500 nt
NT seq
+upstream
nt +downstream
nt
atgggttccaagtccgtgtgtcacacccgttcggagctgttggagctctgtcgtcacttg
cgtcaagagaagctctttgtggagaatgaaaaagcctcactccgggatttgaacgaaaga
gtcaaaaaggcatcgcaggatttggcgctgtctgcatggaccgctcgagcacaacgcgtt
aatctggatgaacttcttctcaaggctggggatccttcgtcttccgtccttcgagccaat
ctagttaaaaaaacacatttccaagacgcttacaaaatgctccagcatcacgaaatttta
tacacagaattccttaaaacgcttcgacaaaaacccaaactcctgggtcaagttttgtca
gtgggttgtaaacgtaacattccaggattagaagaagttgaatgtgcgactttttcggga
ttatacggatcctgttttatggcagaggatgaagtccttacgcttgagctacttcatcat
ttgatgtctgcgcaattggcttcatcacctaatcctagaaagattttaagggcgggcaaa
tgttcgtttagtcggatttataaatcttttattgaggaaatattctccaccaaattattt
ttaaccactgcgctttttgagcccattttatctttattaactgaggatgagattttctta
gatattgatccgtcgaaggctcttataaggtttcctccatctgaaagaaaaaagaaattt
ggaatagaggggacacccgagtatcaaaaacgattgaaggatcatcgagaattcatcata
aaaaaactggaaaatattacacgtaaattcataaatggaatacaggataacatacgctca
ttccctccgtctctaagtcgacttcttagagcgatgtacagccttctcataaagtcgttt
gaactgaaagaagttcatgccatctgctttgacgctatattttatttattcatatgccct
gcaattgttgatccgaatcctgtagggattattgatactcctgtctcctatattgcaaga
tcaaatttgatgcaggttgctcatattctgcaagttttgtgcatgcaaaaatgggaggaa
attgatcctaagcatatggatcttttctcaagatttgataaggactccatgtcctcaatt
tttgaaaatattttagagcttggactctcaaataacgaagagagcattaggaagcctttg
acggagagtaatacgtttgcaggtatgggaatgagtgctgggactgcggctgctagtaat
tttggatttaatgatggctcaaaactttcacgtttggctgttcttatgacaaagtcacaa
cttaatcaacttgtgttatttcttagacacattagagatataaataatgaaaacaagtgc
gataacttattaccgtccagtatggccaatgaattaactgctcttcttgctcctctgccg
gaaattattccaggtggacttaatggtgtacatgaaaataagatggaagagatccccgtg
agtaaatcaagtcaatcgaaaaactctttatctgcacgtttatcagctatgaaaaacggc
tcaaattcgcatagagtcaccccccttgaaaacaattttcatcatagattacatcaagaa
gctgataatgtcttagttattccattgtttgatcctagtacgagctatgatctccctggt
cttttatctgaagaacaagtattatcccgaagtcgtcaaaactcacgggttcgaatgact
cttcctaattcagatggatcaggaaatgaagtgcttgagaaaagaacacggttttctttg
agccaggatgaaggaagtattggtaatacatcggataatttggaagcaatttctgaggct
gcttctaatcattcagcgacgtctagtttggaggatggagatgatcaagaggacgaggat
aatcctattattgataacttatctgacatggtttctgcaaatgtaagtggacgtggcaca
cccaatgtaagtggacgtgatactccatcaagtcaagttgaaggagttccagatgatgat
gaagtaataaggtcggggcgaaacgagggtgaagaagacgaagcaaggggtgccataggt
ggtatggttggactaagaactggacaagcttctcgggggcatcgccacatacctccaaat
aagtctggacaagctgacttggaagaaaagtttggtcgtttcgaaattaaacctcaaata
aagtcacgaggaagtggagtaggtctcgctggagagggtggtgatgaaactgtgtcatta
atatctgacacatggtctactgatgtgctagctagtgatacggagactcttggcgaaatc
cttacgactagctctgatcgatttccccacaacaatcagaatttcgctgatatggatccc
ttttcccgaaatctcatcctagaagaatttgcaacctcttcctctgctggggctgctgct
gctctaccacaacgaatgtcaggaattcaaccgtctatgccatcagattcaacttctgtt
aatttattagatgttggagatacagcctctgaggcatggagtattgatgtcctggatgga
gatagggagagcctttgtttgggggaattagatattgaatatatctcaagcactgtatca
gctgaggataatcaatacatggaaggtatttctcagagtggacgaaacacagatatacta
ttagttgatgataattctcctgttgctaatagagcagaggcaagaggtaataatttatca
cgcccttctagagatgcagccattgaacaatgggcttgctcctctggggtcggaaatatt
gagcatcaagatggagctataagacgtggaagtgatagttccagctcagcggcagttgct
gcacagtcccccacgtcctcaaagttacctcttgggatggagaaagctccacttgaagac
ccaaatcaagcaacactgagttcccacctaagtgcagcttctattgcatcctcaagcgga
agctcaggtgatgctgctgattccaatattaatgcaagctcaagaaaaaatgttttagtt
ccttcatccagcactggagcgattcccaaatgtgctaatcctgataaaaagtctggaaga
tctgagaaattttcattcaaaaattggaaactgcccaaaataagtagaagcagaagttcc
gttgagagtcttcgctcaagttcagataaatgtttcagctcacatagcaatagtttagac
aatccaagtcattcagtggatggccctccactgggatctttgcaacgttcacatgaatcc
tctgacgatattttaaataaatacagaaacaaaaaacccgtggcagttggtaatttaatt
gacataaccgattctctagctgaagaggaagttgaccctcgactcataattgatcacaat
aatttggagaattgctatgcattccaagatgcgaagcgtaaattgcgccttacactttct
tccgttgatttgtcaatgatgcctgatatatgtcatgcctcttcagttgaacctgaggtt
atatggctcctcaaggttcagttatcagaagcccttaacctacaggaccgcaacttcatc
gctcaacttcatgaaaccctcaggtgcctcagcttattcaaaaaagacggtgtatcacgg
atactgaattccctcaaagaagaatataagcgccgtgctccttacatggcgtatcttgtt
cgctgtcgtcaaggtcttctctgtaccctatctcgtcaagagcgtcttttatctcgaatg
aacatcgatcgagacgtctgtgcctcctaccttgtctatgtcgttgttcgcatctttctt
gaaaatcgagagaaaaggctgcatcactttgtgcaggaatttaaggaacttacagttcct
gatgagaaaacagccctcatgaattcattccttgcactcatgaataaagaacttgaacat
gacccaatttggtcatctgtctgctccacggaacaattgaaactaagtaacatagcaata
gagagatccataacctcacacatatatttccatgccatgtatcctaatggagaggcggat
attaatcgggatgaagttctttctgagcatatccgaaaacttggagaaatcattactcca
tctcataaatgtctaagaatcccacgtcaatatcattatgaacaaccctggccctcggca
caggctgaaatccgtcgtctcgctgccttcaaaacaccggctgataaagtttcttgtatt
aaaagggcctctcagaccataatgaatctactaagtcttgggagctctaagggtgtacct
gccgcagatgatttcatccccgtattggtctttatccttattaaagcaaatcctccaagt
cttctttcaaccgtacagtacgttgaaaatttctacggggagaggctctgtggtgaggat
gaatactggtgggtacagacggtgtcggcaattgaattcattaagactatggattattag
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