Lepeophtheirus salmonis (salmon louse): 121126282
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Entry
121126282 CDS
T08214
Name
(RefSeq) PAN2-PAN3 deadenylation complex catalytic subunit PAN2
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121126282
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsm03019
]
121126282
Enzymes [BR:
lsm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
121126282
Messenger RNA biogenesis [BR:
lsm03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121126282
mRNA degradation factors
3'-5' decay
Pan complex
121126282
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAN2_N
UCH_1
Beta-prop_EML_2
UCH
Motif
Other DBs
NCBI-GeneID:
121126282
NCBI-ProteinID:
XP_071747844
LinkDB
All DBs
Position
1:complement(36097887..36102185)
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AA seq
691 aa
AA seq
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MILCIFFQISMEYMNGSNGPEGTSEDFTETEYDGDMMYIPQNEFKLVNSVVGDGTHKDRE
IGISTLAFDQHEELLWMGSRSGHVTSYYGTQFQKYTSFQVHPRDHIRNITTTEQSVLILT
NTTLRGQHRRGVPQFNYSSKNMVDMHSLIVNNRTQRVLMGGMQESLVEYDIGSGKQVSVV
NTEGSCALLREHPRFTCCGDVPCGKIQLRDPRSLALAHSLDAHTGTLSDFDVHGHHLITC
GQSLRHGIEQTDRFLMVYDMRILRAISPIQSMVVPYHLRFLQSMTSQIAIMSANGQVQMA
DTACLATPNLSMFQVEFNLEGLNTISMDISPSNQCLAFGDTGNTIYLYSSYADPVLNPYA
RATEFADPVEQLPAMSIDDEFAVYSSVPRPHLPPGTNSYLSDLWPDRFCRNAFRDTPEIN
PEIIRSMKIIGTVGYARNVTNMKRNLVAYSNVKKHGRCDNLTPSSSSSSFNNGRDKKNHD
HDTLSFSLIPKRYRKVVVKYSKLGVEDFDFDRYNRTGFCGLEATLPNAYSNSMLQILYFI
ENFHKMILNHVCTRETCLACELSFLFHMMNHSSGAPCQSSNFLRSLRTIPEASALGIVLS
GEHGIKKCNVPRLIQSWNRFILQQTHVQCNLPPQHNNNNNSKSVDKEPSHTSSPSRNDNI
IIEFHIIIIFYIFINENVNRNFYFTFAFEFW
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atgatactgtgtatattctttcagatttctatggagtatatgaacggaagtaatggccct
gaaggtacatctgaggattttactgagactgaatatgatggggatatgatgtatatccct
caaaacgagtttaagctagtaaatagtgttgttggcgatggaacgcataaagacagagag
attggtattagtacgcttgcctttgatcagcatgaagagttattatggatgggctcaagg
agtggtcacgttacttcctactacggcacacagttccaaaaatacacctcttttcaagtt
catcccagagatcatatccgtaatatcacaacaacagaacagtctgtacttatccttaca
aacacaactcttcggggccagcatcgtcgtggtgtacctcagttcaattattcttctaaa
aatatggtggatatgcatagtctgatagttaataatcgaactcaacgcgttttaatgggc
ggaatgcaagaaagtcttgtcgaatatgatattggatctggaaagcaggtttctgtcgtg
aacactgagggatcttgtgctcttttaagagagcatcctcgcttcacatgttgtggagat
gttccctgtggtaaaatacaattaagggatcctagatcgctcgcattggctcactcacta
gatgctcatactgggactttgtctgactttgacgttcatggacatcacctaattacttgt
ggacagtccttacgacatggtattgaacaaacggatcgatttttaatggtttacgatatg
agaatattgagagctataagtccaattcaaagtatggtagtgccttatcaccttcgattt
ttacaatcaatgacatcacaaatcgcaatcatgtctgccaacggacaagttcaaatggca
gatactgcttgcttagctacccccaacctatcaatgtttcaagtagagtttaatctagag
ggtcttaatactatctctatggatatcagtccctcaaatcagtgtcttgcttttggtgat
accggaaatactatttacctttactcttcgtacgccgatccagtattaaatccatatgcc
agagccacagaatttgctgatcctgttgaacaacttccagcaatgtctatagatgatgaa
tttgcagtctactcctctgtgcctcgaccccatttaccgccgggaactaattcttattta
tctgatctgtggcctgatagattttgtagaaatgcatttcgtgatactcctgaaattaat
ccagaaattatcagatcaatgaaaattattggcactgtgggatatgcaagaaatgtgaca
aacatgaaaaggaatctcgtggcttattccaacgttaagaaacatggtagatgtgataat
cttaccccttcctcatcttcttcttcatttaataatgggagagataaaaaaaatcatgat
catgatactttaagtttttctttgattccgaaacgctatcgcaaagtggtggtcaagtat
tctaagctgggagtagaggattttgattttgatcgctataaccgaactggcttctgtggt
ttagaagctacacttccaaatgcctactcgaattcaatgcttcaaattctatattttatc
gaaaatttccataaaatgatattaaatcatgtgtgtacccgagagacatgtcttgcctgt
gaattatcctttctctttcatatgatgaatcattcctcgggtgctccttgtcagtcctct
aactttttgcgttcattaagaaccattccagaggcctctgcacttggaattgttctctct
ggtgaacatggaataaagaaatgtaatgttccccgtctcattcagtcatggaatcgattc
atactgcaacaaactcatgtacaatgcaatttacctcctcaacataataataataataac
agtaaaagtgtcgataaagaaccttctcatacttcaagtccttcaaggaacgacaatata
atcatagaatttcacatcattattatattttatatattcatcaatgaaaacgttaatcgc
aatttttattttacatttgcttttgaattttggtaa
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