Lepeophtheirus salmonis (salmon louse): 121126304
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Entry
121126304 CDS
T08214
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121126304
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lsm03041
]
121126304
03009 Ribosome biogenesis [BR:
lsm03009
]
121126304
Enzymes [BR:
lsm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121126304
Spliceosome [BR:
lsm03041
]
Complex A
U2 snRNP components
U2 related factors
121126304
Complex B
121126304
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
121126304
Ribosome biogenesis [BR:
lsm03009
]
Eukaryotic type
90S particles
Helicases
121126304
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
nSTAND3
Flavi_DEAD
SRP54
ResIII
AAA_7
TsaE
Helicase_RecD
AAA_25
T2SSE
AAA_30
HTH_IclR
Motif
Other DBs
NCBI-GeneID:
121126304
NCBI-ProteinID:
XP_040577574
LinkDB
All DBs
Position
11:15748374..15750960
Genome browser
AA seq
709 aa
AA seq
DB search
MPKHRLDLDGASSSKRLKDESPSSTKPGLKMNPYSALPYTPRYFELFRKRITLPVWEYRD
KFLDLLAQHQCICLVGETGSGKTTQIPQWCAEYASKERKSVACTQPRRVAAMSVAQRVSE
EMDVSLGQEVGYSIRFEDCSGPRTILKYMTDGMLLREAMSDPMLDAYKVILLDEAHERTL
ATDILMGVLKTVTTHRNDLKLVIMSATLDAGKFQNYFDNAPLMNVPGRTHPVEIFYTPEP
ERDYLEAAIRTVIQIHMCEEQEGDCLLFLTGQEEIEEACKRIKREVDNLGNEIGDLKCIP
LYSTLPPNLQQRIFEPAPGRKSNGAVGRKIVVSTNIAETSLTIDGVVFVIDPGFSKQKVY
NPRIRVESLLVSPISKASAQQRAGRAGRTKPGKCFRLYTEKAFKNEMQENTYPEILRSNL
GSVVIQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALDDDGNLTELGAIMAEFPL
DPQLAKMLIASCENNCSNEILSITAMLSVPQCFVRPNDAKKAADDSKLRFAHIDGDHLTL
LNVYHAFKQNMDDPQWCYDNFVNYRSLKSADNVRQQLCRIMDRFNLKRTSTDFASKDYYV
NIRKALCAGFFMQVAHLERSGHYLTVKDNQIVQLHPSTCLDHKPEWVLYNEFVLTTKNYI
RTVTDVKPDWLIKAAPQYYDMNNFPQCEAKRQLEQVIQRINSRQYQKGF
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgccgaagcatcgtttggacttggacggagcttcttcttcgaaacgcctcaaagacgaa
tctccttcctccacaaaacctggtttaaaaatgaatccctattccgccctcccctacact
ccccgctattttgaactctttcggaagaggattactctccctgtttgggagtaccgtgat
aaatttctggatctcctggctcagcatcagtgtatttgtttggtgggagagacaggatct
gggaaaacaactcaaatccctcaatggtgtgcagagtatgcaagtaaagaacggaaaagt
gtggcgtgcacacaacccagaagggttgccgccatgagtgtggctcagcgtgtatctgag
gaaatggatgtctcattagggcaagaagtgggttactccattcgttttgaggattgttcc
ggtccgcgtactattctcaagtacatgactgatggtatgttacttcgagaagcaatgagt
gatcccatgttggatgcatataaagttattttactcgatgaagctcacgagaggactcta
gctactgatattctgatgggtgttttgaagacagtgactactcatagaaatgacttaaag
ttggtcatcatgagtgctactctggatgctggcaagtttcaaaactattttgacaatgca
cctttgatgaatgttccgggtcgtacacatcctgttgaaatattttatactccggagccc
gagagagactaccttgaggctgctatccggacagtgattcagatccacatgtgtgaagag
caggaaggagactgtcttctctttctcacaggccaagaagaaattgaagaagcttgtaaa
agaattaaaagagaagttgataatttaggaaatgaaataggagatcttaagtgtattcct
ctctactccactctacctccaaatcttcagcaaagaatatttgaacccgcgcctggaagg
aaatccaatggagctgttggacgaaagatcgttgtttccacaaatattgcagaaacctct
cttaccattgatggagtggtttttgtgattgatcctggattttctaaacaaaaagtatat
aatcctcgtatccgtgttgagtctcttcttgtatcccctatcagtaaagcttcggctcag
cagcgtgcaggaagagcagggcgtacaaaacccgggaaatgttttcgactttacaccgaa
aaagcattcaaaaatgaaatgcaggaaaatacataccccgagattttgagatctaacttg
ggctctgttgtaattcaattaaaaaaactgggcattgatgatcttgtccatttcgatttt
atggatccacccgctcctgaaaccttgatgcgagctctggaactccttaattatcttgca
gctctagatgatgacgggaatttgactgaactgggggcaatcatggctgagtttccactt
gatcctcaattagccaaaatgttgatagcttcatgtgagaacaattgttcaaatgagatc
ctttccattacagccatgttgtctgttcctcagtgctttgttcgtcccaatgacgccaag
aaagctgccgatgattctaaactcagattcgcacatattgacggcgatcatttaacattg
cttaacgtgtaccatgcatttaagcaaaatatggatgacccacaatggtgttatgataat
tttgtaaattaccgctctctcaagtctgcagataatgtccggcaacaattgtgtcgcatt
atggatagatttaatttgaagagaacttcaacagactttgcatctaaagattattacgtt
aacattcgtaaagcactttgtgctggtttttttatgcaagtagcacatcttgagagatcc
gggcattatttaaccgtaaaggataaccaaattgtacaactgcatccctcaacttgcttg
gatcacaaacctgaatgggttctctataacgaatttgttcttactaccaaaaactatata
cgaactgtaacagatgtcaaaccagattggttaattaaggctgcaccccaatactatgat
atgaataacttccctcaatgtgaagccaaaagacaattagagcaagttattcaaagaatt
aactcaagacagtatcaaaaaggattttaa
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