Lepeophtheirus salmonis (salmon louse): 121126512
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Entry
121126512 CDS
T08214
Symbol
betaCOP
Name
(RefSeq) coatomer subunit beta isoform X1
KO
K17301
coatomer subunit beta
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lsm04131
]
121126512 (betaCOP)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lsm04147
]
121126512 (betaCOP)
Membrane trafficking [BR:
lsm04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
121126512 (betaCOP)
Exosome [BR:
lsm04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
121126512 (betaCOP)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Adaptin_N
Coatomer_b_Cpla
Coatamer_beta_C
HEAT_2
HEAT
Cnd1
MMS22L_C
Arm
Motif
Other DBs
NCBI-GeneID:
121126512
NCBI-ProteinID:
XP_040577769
LinkDB
All DBs
Position
11:complement(10398557..10408254)
Genome browser
AA seq
1096 aa
AA seq
DB search
MHFKTKKLQMVHFAYTSSNLYRQLNLYARYIIKMKRRKGRKKGRGGAVIVRAPGIGVVDL
EGECLRSQFELLLLVLVVLKKERERENLRLSVWHTSSNSWIFFSFEKMSSAELPSYTIIQ
IPSDFEVPNEIGLKADFEKGDTKIKIEALKKTIYMILSGEKVNHLLMNIIRFVLPSQDHM
IKKLLLIFWEIVPKKTSDGKLLQEMILVCDAYRKDLQHPNEFIRGSTLRFLCKLKEPELI
EPLMPTIRSCLEHRHSYVRRNAVMAIFTIYKSFDFLIPDAPELIANFLEGEQDMSCKRNA
FMMLIHADQDRALAYLSSCIEQVQNFGDILQLVIVELIYKVCLANPMERSRFIRCIYSLL
NSNSPSVRYEAAGTLVTLSTAPTSVKAAASCYIELIVKESDNNVKLIVLDRLMAMKESPS
HEKILSELVMDILRVLSSTDLEVRRKTLNLAMELVTGRTVSEMVLILKKEISKTHGAAVE
TAESGSGSGSRSSGDEGDTGKYRQLLVRTLHTCCIKFPDVAPDVIPLLMEFLGDIKDLAA
QDVLIFIREAMAKFPDLRQIILDKLLESFLTIRNSKVHRAAIWILGEYCESPKDIQAVMN
EIRQSLGELPIVEDEIRKAAGEEKLEDESTSIVAPSSGPQKLVTADGTYATQSAFVTQSS
SSSGKSKQADRPPLRKYLMDGDFFIGAALAPSLTKLALRYIAVVTDEKKRNRFVAETMLV
ITSILHLGKSGLPTKAISNDDADRISLCLKALVDDNEIIKNIFQEECRNTLVEMLEAQTS
TTKEVATDEKQKQLERYERICEQPDKPIKFMQLCGGVDSAASGDIFELGLSQALGTTKKS
GSSSFSSTKLNKVTQLTGFSDPVYAEAYVHVNQYDIVLDVLVVNQTADTLQSCTLELATL
GDLKLVEKPQPVVLSPNDFATIKANVKVASTENGIIFGNIVYDCTGASSDRNVVVLNDIH
IDIMDYIVPASCTESEFRSMWAEFEWENKISVVTSITDLHEYLMSLLKSTNMKSLTPEKA
LSGECGFMAANLYARSIFGEDALANVSLEKNLQKPDSTVTGHIRIRAKSQGMALSLGDKI
NLSQKVRGKKAVDAQG
NT seq
3291 nt
NT seq
+upstream
nt +downstream
nt
atgcattttaagacgaagaaattgcaaatggtacactttgcttatacaagtagcaacttg
tacagacaactcaacttatacgcaagatacataattaaaatgaaaagaagaaaagggagg
aaaaaagggagaggaggagctgtgattgtgcgcgcgcctggaattggagtagttgacttg
gagggggaatgtctgaggagtcagtttgagctgctgctgctggtgttggtagtgctgaag
aaagaaagagagagagaaaatctaaggttgtcggtgtggcacacgtcatcgaattcgtgg
atcttcttctcctttgaaaaaatgtcatccgcggagcttccgtcctatactataattcaa
atcccctcggatttcgaggtccccaatgagataggcctcaaagcggatttcgaaaaaggg
gacacgaaaatcaagatcgaggctctgaaaaagacaatttatatgatccttagcggggaa
aaagtgaatcatcttcttatgaatatcattcgcttcgttttaccttctcaggatcatatg
attaaaaagcttctccttattttttgggagattgttcctaaaaaaacatcggacggaaag
ttacttcaagaaatgatccttgtttgtgatgcgtatcgaaaggatcttcaacatcccaat
gaattcattcgaggctcaacactacgatttctatgtaaattaaaagaacctgagctcatc
gagccacttatgcccacaattagaagttgtttggagcatcgtcattcctacgttcgacgc
aatgctgttatggctatctttaccatctacaaaagctttgatttcctcattcctgatgct
cctgagctcattgctaattttttggaaggggagcaagacatgtcatgcaagaggaatgca
tttatgatgctgattcatgctgatcaggatcgtgcccttgcgtatttgtcttcttgtatc
gaacaagttcaaaactttggagatattctacaattggttattgtagaacttatttacaag
gtctgcttagcaaatcccatggagagatcccgtttcattcgatgcatttacagcttatta
aactcaaactctccatctgtaagatatgaagctgcaggtaccttggtaacactatccact
gctccaacttccgtgaaagctgcagcctcatgctatatcgaattaattgtgaaggaaagt
gacaataatgttaaattgattgttcttgatcgtttaatggctatgaaggagtctccttca
cacgaaaagattttaagtgaactcgtaatggatattttgagggtattatcatctacagat
cttgaagttcgtcgaaaaacactcaatttggcaatggaattggtcacgggtcgaactgtt
tcagaaatggttcttattttaaagaaagaaattagtaaaacacatggagctgcagttgaa
acagcagaaagtggatctggaagcggatcacgttcatcaggggacgagggagatactgga
aagtaccgtcaactcctcgtaagaactctacacacatgttgcattaaattccctgacgtt
gcaccagatgttatacctcttcttatggaattccttggggatatcaaagatcttgcggct
caagatgttcttatatttattagagaagcaatggctaaattccctgatctgagacaaatt
atcttagataaattgcttgaatccttcttaactatacgtaattcaaaagtacatagggca
gccatatggatccttggggaatattgcgaatctcccaaggatatacaggctgttatgaat
gaaattcgacaaagcttaggagaacttcctatcgttgaggatgaaattcgtaaagcagca
ggggaagaaaagttagaggatgagagtacctcaattgtagcaccctcatctggtcctcaa
aaacttgttacagcagatggtacttacgctacgcaaagtgcatttgttacacaatctagt
tcttcatcagggaaatccaaacaagctgacaggcctccattacgaaaatatcttatggat
ggagatttctttattggagctgctcttgccccatcccttactaaattagcactaagatac
attgctgttgttactgatgaaaaaaaaagaaatcgtttcgtggcggaaacaatgcttgtg
ataacatccattcttcatctcggtaaatctggattaccaactaaggccatttcaaacgac
gatgccgataggatctctctctgtttgaaggctcttgtggatgacaatgaaatcatcaaa
aatatattccaagaggagtgtcgaaatactcttgtagaaatgttggaggctcaaacatcc
acaacgaaggaagttgccactgatgaaaaacagaagcaattagaacgttatgaaaggata
tgtgaacaaccggataagcctattaagtttatgcaattatgtggaggagtagactcagcc
gcttctggagatatctttgaacttggactaagtcaagccttgggaacgactaaaaagtct
ggatcatcatccttctcttcaactaagttaaacaaggtcactcaattgactggtttttcg
gatcctgtttatgctgaagcctatgttcatgtaaatcagtatgatattgttttggatgtc
cttgttgtcaatcaaacggctgatactcttcaatcttgtaccttagaactggcaaccctg
ggggatttgaaattagttgaaaaacctcagcctgtggttctttctccaaatgattttgcc
acgatcaaagccaatgtcaaagttgcctcgactgaaaatggaattatatttgggaacatt
gtctatgactgtacaggagcctcttcggatcgcaatgttgtcgttctaaacgatattcat
attgacatcatggattatattgtaccagcctcatgcacagagtctgaattccgctctatg
tgggctgaatttgaatgggagaacaagatttccgttgttacgagtataacggatctgcat
gaatatttaatgagccttctcaaaagtacgaacatgaagagtttgacgccagaaaaggcc
ctttccggagagtgcgggtttatggcggcgaacctgtacgccaggtctatctttggtgaa
gatgctcttgctaatgtgtcattggaaaaaaatcttcagaaaccagattccactgtgaca
ggtcatatccgtattcgagcaaagtctcaaggaatggctctttccttaggggataaaatt
aacttatctcagaaggtgagggggaaaaaggctgtggatgcacaaggatga
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integrated database retrieval system
