Lepeophtheirus salmonis (salmon louse): 121126741
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Entry
121126741 CDS
T08214
Symbol
Rrp46
Name
(RefSeq) exosome complex component RRP46
KO
K12590
exosome complex component RRP46
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121126741 (Rrp46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsm03019
]
121126741 (Rrp46)
Messenger RNA biogenesis [BR:
lsm03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
121126741 (Rrp46)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
121126741
NCBI-ProteinID:
XP_040577999
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All DBs
Position
1:36999417..37000243
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AA seq
214 aa
AA seq
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MSSLEQRDLFAESGILSAYDGSASLSQGGTLAYAAVSGPGEPRLSTKDRLYDQTVVDIYY
RTHERDFASKNLGTFSECLKSGLIPTDYPRTGTALYLQQGEDDGSYSATSLNAGMLALMD
SGIALQFLTAAVNIAYNSESGSFILDPDKLESQNAQALILFVFESRSRQMISSSLQKGKV
SLKVFNKALKMAREASASIFDFYRKAVEKKFSKD
NT seq
645 nt
NT seq
+upstream
nt +downstream
nt
atgtcctccttggaacaaagagatttgtttgccgagtctgggatcctcagtgcttatgat
gggtccgcttccttgtctcaaggcgggacattggcctatgcggccgtctcaggtccggga
gagcccagactttcaacgaaggatcgcctctacgatcagactgttgtggacatttattac
cgcacccatgagcgggatttcgcttcaaaaaacttggggacgtttagtgagtgtttgaag
agtggcctcatcccgacggattacccccgaaccggaacggcgctttacctccaacaggga
gaggacgatggatcctactctgctacttcactgaatgcgggcatgttggcactcatggac
tctggaatcgctctccagttcctcactgccgctgttaacatagcgtataactccgagtcc
ggctccttcattctcgatccagacaaattagagtctcagaatgctcaagcactcatttta
tttgtctttgagagccgctctcgacaaatgatatcctcatcgcttcaaaaaggaaaggtc
tcgctcaaagtctttaataaggcgcttaaaatggcaagggaagcctctgcctccattttt
gatttctatcgaaaagccgtggagaaaaagttttccaaggattga
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