Lepeophtheirus salmonis (salmon louse): 121126748
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Entry
121126748 CDS
T08214
Symbol
Dora
Name
(RefSeq) zinc finger SWIM domain-containing protein 8 homolog isoform X1
KO
K25207
zinc finger SWIM domain-containing protein 8
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lsm04121
]
121126748 (Dora)
Ubiquitin system [BR:
lsm04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul2 complex
Target recognizing subunit
121126748 (Dora)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ZSWIM4-8_C
SWIM
Motif
Other DBs
NCBI-GeneID:
121126748
NCBI-ProteinID:
XP_040578000
LinkDB
All DBs
Position
12:complement(2966875..3000074)
Genome browser
AA seq
1727 aa
AA seq
DB search
MMDDVGGLVADLDENFDEEVEDEDEDSVCSWMSDSESVVHNWRGWKVMGLRECVSGCEGV
GVEGVEGGEWSGCLKGPLSLCELGARSVARWIPFELVERYYPPVPEEVQLRIAFWSFPER
EEDIRLYSCLANGCVEEYSKGEALLRSGGVRDSLQIGFHLSATVVPSDGKASQSTSITFD
RKRIVSCQCSCESKAEWCSHIVASSLYRIHRSVTLRAPVSESLSRLRRDQLQKFAQYLIA
ELPLQILPAAQKILDELLSQSPTAINTVCGAPDPTAGGSASELSSFYLDSKNLKNNISTI
LIKFCVPSPIVFSDVNYLSTTPPLSAAEWTSYLRPLRGREPEGIWNLLSIVREMFRRCDH
NALPLLEILTLQCIETAQIMVWWFYTKVALQQKGPAKHNVNSNSQASQNACAYLCDEIVT
LWKLATLNPCISPQERQTLKQRLIYYHTSVIHKIKANQNSVPNKSNNRNKINELEMFPGF
KPAIEGCILDWKNYPINGVTFGHNSKYLSPFAIFKQNPSSDCSQVNSSQAVIRCEYPTTA
RSHRTIARESNESDEGVEMNGNNVESVHQRIEPQDENDRDSDWSSSAQDSGEVRRSNSHV
VFDVDNQEQEDLQYRVYFYDSGVPINSRSNEKDKELVDVFKNLRSSIDDPWEVLFLRTEG
LYAHGHIEHACSLAVHLANDMLKSTLDLLAESRSVNGGNIVGGLNKRHKRNVNAATHQVT
LTASNTLSHCAFLCSVLLENESYHSLAFQIAMYGLEMPRPPASIKPMEVKLANQESELVN
LLKRVPQGQWELNIIREKALQLKEGTLKSRGDALLPLTLASFIFESLVLPLSNEEAKMST
KSLLLYTDEHLGFEAAVEAIGMKASVSEADHPLLCEGTRRQRGELVLILLLHYKNEPLKI
SKIMDKFLDKEVHPLFKGPITPHSYCVGNATIFSGCSSPSAVRRIGNQFQSLNLRNESSY
ERDYHRSQSDWGQFLDDHKEESLSNRHNRNKGTRNRGNDQASDSGSSGNSSADSIDSSSS
SSAVLRVHQAHNSSDTSLTWIRKTSSSQSLMHGGLVHFGSGAISNRGPTLSSVTTNSNIA
PRPIVSGLKINRFRGKRNCPSLPNQPSDSLAHFMYELAKTVLTKAGGNSSTSLFNQQTAS
SNHRGPHRALLMCAFQIGLYSLGLYNAVTSNWLSRTYSSQVHWVTSQALEIGTPAIEFLI
GTWEGHLSPTEAVSIADRVSRGRDPHVIRASAELALSVLPHASALKVTEIQRAICQCQQQ
SQDMLERACLAVEKAATGGGVYPEVLFEVAKHWFSLWEKSIPNQHHEQQSLQISQHSVPN
IAPQDSQAIHQQLQVATGVHYPFYGLISRFPQGQALNHAALQMYAVTSPPPAPSLSGHHL
QQQFQAAAAVQRQAAVQAVAAAAAAVANPPPFQMYPSGGNSPVSVTTAHTRFGGIYQLSA
AIPSGQIGSLLSASPSGTITQIPVTPALSTNLLPHLNSSCCSSSVGQKQPTQTVQSGVPF
LSNANSVGHVSHRFLISAYRVGMLALESLGRRTTEERPEVRFAQNPTYGPDVMWLKSISR
MLGLNYFQNFLVIIGATIASPFLLQELTLEGAINLACAANSGAQSGIPSSSSVSLTFSNT
SSSTGNTVGYSTIMQSIRSNPHLTQLASKCYQMYYQCIHQRLFQLAPEDYEEFASIILHA
RKAFYWTVEGPRTFQTLLQSIRRSKSCTKELWQKVLSRVQNTTIEQL
NT seq
5184 nt
NT seq
+upstream
nt +downstream
nt
atgatggatgatgtgggcgggttggttgcggatttggatgagaatttcgacgaggaagtg
gaggacgaagatgaagactctgtgtgttcctggatgtcggatagtgagtctgtggtgcac
aactggcgtggttggaaggttatgggtctgcgtgagtgcgtgagtggttgtgaaggtgtt
ggcgtggagggcgtggagggtggggagtggagtggttgtttgaagggtccgctgtcgttg
tgcgagctgggtgcgcggagtgtggcgcgttggatcccgtttgagttggtggagcgttac
taccctccagtgccggaagaggttcagctgcggatcgccttttggagcttccctgagcgg
gaggaggatattcgtctctactcgtgcctggccaacgggtgcgtggaggagtatagcaag
ggcgaggctctgttgcggagtgggggtgtgcgtgattctctgcagatcgggttccacctg
tctgccacagtggttcccagcgacgggaaggcgagtcagtccacttccatcacgttcgac
cggaagcggatcgtgtcttgtcagtgttcctgcgagtccaaagcggagtggtgctctcac
attgtggcatcctctttgtatcgaattcaccgctcggttacattgcgagctcctgtctcg
gagtctctgtcacgcctcagacgagatcagcttcagaaatttgctcaatatctcattgct
gaactgcccctccaaattcttccagctgcacagaaaatactggatgaacttctgtcccaa
agtcccaccgccatcaatactgtgtgtggtgcaccagaccctactgctggtggttctgct
agtgagctatcttccttttatttggattccaaaaatttgaagaacaatatatcgacaatt
ctgataaagttttgtgttccttcccctattgtatttagtgacgtcaactacctctcaacc
acccctcctttgtctgcagctgaatggacgtcataccttcgtcctcttcgagggcgtgaa
cccgaaggtatttggaatttactttcgatagttagggaaatgtttagacgatgtgatcat
aatgctctgccattattggagatcctaacccttcaatgcatagaaactgctcaaattatg
gtatggtggttttatactaaggtcgcactgcaacaaaaaggccctgcaaagcataatgtc
aattccaattctcaagcatcacaaaatgcttgtgcatatttatgtgatgaaattgttaca
ttgtggaaattagccacgctgaatccctgtatttctccacaggaaagacaaacacttaaa
caaaggctaatttactatcatacttctgtaattcataaaataaaagccaatcaaaattca
gttcctaacaaatcaaacaatcgtaataagattaacgaattagaaatgtttcctggattt
aaacccgccatcgaaggatgtattttagattggaaaaactatccgatcaatggggttact
tttggtcataattctaaatatttatcaccttttgccatttttaaacaaaatccttcatca
gattgttcacaggttaattcttctcaagctgttattcggtgtgaatatccgaccactgct
agatcgcatcgtaccatagctcgggaaagtaatgagtcggatgaaggagttgaaatgaat
ggaaataatgtagagagtgtacatcaaagaatcgaacctcaggatgaaaatgatagagac
tctgattggagctcttctgctcaggatagtggagaggttaggagatctaatagccatgtt
gtctttgatgtagataaccaagaacaggaagatcttcagtatcgtgtctatttctatgat
tcaggggttcctattaactctaggtcaaacgagaaagataaggagctggtagatgtattt
aaaaatttgcgttcgtccatcgatgacccctgggaagtactatttttgagaactgagggt
ctttatgcacatggccatatagaacatgcttgttcgcttgctgttcaccttgctaacgac
atgctcaagagtacattggatctattagctgagagcagatccgtaaacggaggaaatatt
gttgggggattgaacaagaggcacaaaagaaatgttaatgcagctactcatcaagttact
ttaacggcatcgaacacgttatctcattgtgcatttctttgttcagttctattagaaaat
gaatcatatcatagtcttgcttttcagatagcgatgtatggtttggaaatgcctcgacct
ccagcttctattaaacccatggaagtaaagcttgctaatcaggaatctgaactagtgaat
ttattaaaaagagttccacaagggcaatgggaattgaacataataagagaaaaggcattg
cagttaaaagaaggtactttaaaatcaagaggtgatgctcttttaccccttactttagcc
tcttttatctttgagagccttgttttgcccttatctaatgaggaggcaaaaatgtctact
aagtcgcttttattgtatacagacgagcatctgggattcgaagctgcagtcgaagccatt
gggatgaaagcgagtgtaagtgaggctgatcatccgttactttgtgaaggaactcggcga
caaagaggggagcttgtgttaattctcttactgcattataaaaatgagcctctaaaaatt
tcaaaaattatggacaaatttttggataaagaagtacatcctctttttaagggtcctatt
acgcctcattcatattgtgttggaaatgcaactatttttagtggatgtagttccccctct
gcagtgagaagaataggaaatcagtttcagtcgttaaatttgagaaatgaatcaagctat
gaacgggattatcatagatcccagtcagattggggacaatttttagatgatcataaggaa
gagagtttaagtaatcgtcataatcgaaataaaggaacaagaaatcgagggaatgatcaa
gcttcagactcaggatcctcaggaaattcttctgccgattccatcgactcgtcttcctct
tcctctgctgttctcagggttcatcaggctcacaattcttctgatacttcactaacatgg
atacggaagacatcatcttctcagtcattaatgcatggcgggttagtacattttggctca
ggggctattagcaatcgtggacctactctgtctagtgttaccaccaattctaatattgcc
cctcgtcctatcgtgtctggtctaaaaatcaataggttcagaggaaaacgaaattgtcct
agtttacctaatcaaccttcagattctttagctcatttcatgtatgaattagctaaaact
gttcttacaaaagctggtggaaacagttcaacatcgcttttcaaccaacaaactgcttca
tccaaccatcgtgggcctcatcgagctcttctcatgtgcgcctttcaaattggtttgtat
tctctcggcttgtataatgcagttacttctaattggctcagtcgaacttattcgtctcaa
gtacattgggtaacttctcaagcattagaaatagggacaccagctattgaatttttgatc
ggaacgtgggaaggacatctttctccaacagaagccgtatcgattgctgacagagtttcg
aggggtagagatcctcatgttattcgtgcatctgctgaacttgctctttctgttcttcct
catgcatctgctctcaaagttactgaaatccagcgtgccatttgccaatgtcaacaacag
agtcaggatatgcttgagagagcatgtcttgcggttgaaaaagcagcaactggaggaggg
gtttaccctgaagtgctatttgaagtagctaaacattggttttctctctgggaaaagtct
attcctaatcagcatcatgaacaacaatctttacaaatatcgcagcattcagtccctaat
attgctcctcaagattctcaagcaatacatcagcagcttcaagtagctactggtgttcat
tatccgttctatggtcttatttcacgttttcctcaaggtcaagcattaaatcatgcggcc
ttacaaatgtatgctgtaacttctcctccaccagcaccttcactttcaggacatcatctt
caacagcaatttcaggcagcggctgctgttcaacgtcaagctgcggtacaggctgtggct
gcagcagcagctgcagtagctaacccacctcctttccaaatgtatccctccggtggaaat
tcacctgtctctgtcactactgcacatacaagatttgggggtatttatcaactttcagca
gctatcccaagtggacaaataggatcattattgtccgcttctccatcggggactattact
caaattccagttacaccggccttatcaacaaatttactgccccatctaaattcttcatgc
tgtagttcctctgttggccagaagcaaccaacgcaaaccgtgcaatctggagttcctttc
ctttctaatgcaaattccgtgggtcatgtttctcatagatttttgatttctgcttatagg
gttgggatgttggcactggaaagtcttggaagaaggacaaccgaagaaagaccagaggtt
agatttgctcaaaatcctacttatggcccggatgttatgtggcttaaatcgatttcgagg
atgttaggtctaaactatttccaaaattttttggttataattggagctactattgcgtcc
ccatttttgcttcaagaactgacgctagaaggagctattaacctggcctgtgctgcaaat
agtggggctcagtctgggataccttcttcttcatctgtctccttaacattctcgaatacg
tcttcttcgacagggaacacagttggttattcaaccataatgcaatctatcaggtcaaat
ccacatttgacccaattagcttctaagtgctatcaaatgtattatcaatgtatacatcaa
cgcttgtttcaactggccccagaagactatgaagagtttgccagtataattcttcatgcg
cgtaaggcattttattggactgttgaaggaccaaggacatttcagacgttacttcagtct
attagaaggtcaaaatcatgcaccaaggagttatggcagaaggtcctctcgcgtgtccaa
aatactaccattgagcaattgtaa
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integrated database retrieval system
