Lepeophtheirus salmonis (salmon louse): 121127029
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Entry
121127029 CDS
T08214
Symbol
Vps50
Name
(RefSeq) syndetin isoform X1
KO
K23288
syndetin
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lsm04131
]
121127029 (Vps50)
Membrane trafficking [BR:
lsm04131
]
Protein recycling
Others
EARP complex
121127029 (Vps50)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Syndetin_C
Vps54_N
Motif
Other DBs
NCBI-GeneID:
121127029
NCBI-ProteinID:
XP_040578324
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Position
12:8394153..8397566
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AA seq
650 aa
AA seq
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MTEEALDVSLAQQIVNFDDRAYTDLYEAYSILEKKQVSLDQLLMHLISAVHNTSWKVVFI
HTSLRSNANDNVQETFDEICGRILPDEILTCLLRLCSSLWNIMHSYRKIVDWHLLKSDKY
AYKLKNGLTRVWADVQTKIRVFVLNNDLSKFEIETFLKFMDIIHCLIQVGHLFCGSESDT
LQESIKQQCWNYFVCYHKKKLKEIQRYLDHETWKLTSTRSNFNVSELPEFNHLKDIGIKR
SMIGDSLLDKCPFQNYYLSKYSRSSQLRNTKLADQHYTVDVDSDDSDVPDDLKKDFLEEE
EIIQSIKFTKNREFITETSLAILRLCGSYLELMKLLDRIAERIFGSFCQLIELYAFTVHH
FFTQSLNEHCRDLICSFELNNHLSRIEDSLFASKTLDSPKFNQIDATPENLFGLNEKMIA
VESVLFLGRQLIELKSTISGLISAESVQHYYNASINFLPELRKPIYMSVCGFVSNYDHIT
YLMSRVSWDVKEVQSQHSHYVDVMLREQQMFSIRLDTLEQNANFDIYPEIWGELWNLNLL
HASNTFVDGFSNAKNCSNEGRALMQLDYRHFVMKIEKVTSMKPAPFQNYVTNYIKAFYIP
ETELEDWLKRHTEYKSKHLESLANCIVYKNNRTKKKINSLLADLSVRLRK
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atgacagaggaagcactggatgtctcattagctcaacaaattgtaaattttgatgatcga
gcctatactgatctatacgaagcctacagcattttagaaaagaaacaagtatcattagat
cagcttcttatgcatcttatatcggccgttcataatacatcctggaaggtagtctttatt
catacaagtctgcgttcgaatgctaatgacaacgtacaagaaacatttgatgagatatgt
ggtcggattcttcctgatgaaatacttacttgtttgttaaggttgtgtagtagtttatgg
aatataatgcattcttacaggaaaattgttgattggcatttattgaaatcagataaatat
gcatataaattgaagaatgggttaactcgtgtatgggcagatgtacaaactaaaattaga
gtttttgtattaaataatgacttgtctaaatttgaaatagaaactttcttgaagtttatg
gatataattcattgtctaattcaggttggccatcttttctgtggttcagaatcggatact
cttcaagaatctataaaacaacaatgttggaactatttcgtatgctatcataagaaaaag
ttaaaagaaatccagaggtatcttgatcatgagacatggaagttaacatctaccagatct
aactttaacgtttcggaacttcccgagtttaaccatttaaaagacattggaattaaaagg
tcaatgattggtgattctctcttagataagtgtccctttcaaaattattatttatccaaa
tattcacgaagttcacaactaaggaataccaaattagctgaccaacattatactgttgat
gttgattcagatgattcagacgtcccagatgacttaaaaaaggactttttggaagaagaa
gaaattatacaatccattaaattcaccaaaaatagggaattcattactgaaacttccttg
gcgattcttagattatgtggtagctatctggaattaatgaaacttctcgatcgaattgca
gaaagaatatttggatctttctgtcaattaatagaattatatgcgtttactgtgcatcat
tttttcactcaaagtttgaatgaacattgcagagatcttatttgttcattcgaactaaat
aatcatctttctcgaattgaagatagtttatttgcttctaagactctagattcaccaaaa
ttcaatcaaatcgatgctactccggaaaatctattcggattaaatgaaaaaatgattgca
gtagagtctgtactttttttgggacgtcaactcatagaacttaagtctactatctctggc
cttatatccgcggaatcagtacaacattattataatgcgtctatcaatttcttaccagag
cttaggaaacctatatacatgagtgtatgcggatttgttagtaattacgaccatattaca
taccttatgagtcgtgtttcctgggatgtaaaggaggttcaatcccagcatagccattat
gttgatgtcatgttgcgagaacaacaaatgttcagtattcgtctagacacactggaacaa
aatgcaaattttgatatttatcctgaaatttggggagaattatggaatttgaacttattg
catgcctcaaatactttcgttgacgggttttccaacgcaaaaaattgcagtaatgaaggt
cgtgctttaatgcaattggattatagacacttcgtcatgaaaattgaaaaggtgacctcg
atgaaaccagctccatttcaaaactatgtaactaattatataaaagccttctatatacct
gagactgaattagaagattggcttaaacgtcatactgaatataaatctaaacatctggag
tcattggcgaattgtattgtatataaaaataatcgcaccaaaaaaaaaattaatagtcta
ttggccgatctatctgtgagattgaggaaatag
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