Lepeophtheirus salmonis (salmon louse): 121127297
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Entry
121127297 CDS
T08214
Symbol
HBS1
Name
(RefSeq) HBS1-like protein
KO
K14416
elongation factor 1 alpha-like protein
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121127297 (HBS1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsm03019
]
121127297 (HBS1)
Messenger RNA biogenesis [BR:
lsm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
121127297 (HBS1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
MMR_HSR1
Roc
Motif
Other DBs
NCBI-GeneID:
121127297
NCBI-ProteinID:
XP_040578555
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All DBs
Position
12:complement(12852091..12856506)
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AA seq
644 aa
AA seq
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MSRHREIRKIDLDDYEDDDYGSSYPESICELSTSMEKEFIYERSGKSPKMTEFLNPGEWG
VECEEDSSNLSPPLPLLSPEDNERMGEALEEILDVLGLDSIPESRIKDQIWKCDFDSSLA
LNTLLNNPPTFHSEAARRRRVSPLTPLTPLTPAPLPATTTKAESLAPKALPMRRMPIAEE
EAAAPLPFKNLNARTPNSPISACNAPPMRKNNIDVLSSFKSQGSRKDSLNLIVAGHVDSG
KSTIVGHFLHNMGEVSSKTLHKYEIESKKSGKSSFSYAWVLDETSEERSRGITINCGSVQ
FSTNSKTIHILDAPGHKDFIPNMISGTYQADAAILVINSNTGEFEVGLDSGGQTREHGLL
LRSLGINPIIIAINKLDTVGWSEKRFEEIRSKMNIFLKQIGYKNQDITYIPISGLTGDNL
TEPSTHLIYWKTKFKTLLHCIDDLNPPERLLQKPFRMSVSDVFKAEQSSGISISGQIVSG
FVLKDDKILVCPSGELGTVKNIAKSGFAGDFVSINISGLSDQLSPGMILSDPQFPVPSSK
ALRARIVVFDSPIPLIKGSAMVLHCGNIYVQASLAKLVSLLNKSNGQVIKKKPRCLPKNS
NAVVEIQTETAVGLELYSDYRDLGRFMLRCDGRTLAAGIVTQIL
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgacatagagagattcggaagatagatttggatgactacgaggatgatgactac
ggttctagctaccctgagagtatctgtgaactcagtacttcgatggagaaggagttcatt
tacgaacgaagcgggaaaagtcccaagatgacggagttccttaatcctggagagtggggc
gtggagtgtgaagaggattcctcgaacttatctcctcctttgcctcttctgagccctgag
gacaatgagcgaatgggcgaggctttggaagagatcctggatgtcctgggattggactca
attccagagtcgcgcatcaaggaccaaatttggaagtgtgattttgattcatcactcgcc
ttgaacacacttctcaataatcctccaacatttcattcagaggcagcgagacgcagaaga
gtctctccactcactccactcactccactcactcctgcccctctacccgccacaaccaca
aaggcagagtctctggctcctaaagcactcccaatgcgacgcatgcccattgctgaggag
gaggcggcggcaccacttcccttcaaaaatttaaacgcaaggactcccaactctcccatc
tcagcctgcaatgctcctccaatgcgcaaaaacaacattgacgtcctctcttctttcaaa
agccaaggctcgcgtaaggattctcttaatttaattgtagctggacatgtggattccggg
aaatcaactattgtggggcatttcctacacaacatgggagaagtctcttctaaaacgcta
cataaatatgaaatagaatccaaaaaaagcggcaaaagttcattttcgtacgcttgggta
cttgatgaaacatctgaggagcggtccagaggaattactattaattgtggttctgttcag
ttttcaactaattcgaaaacaatccatatcttggacgctccaggacataaagatttcata
cctaatatgattagtggaacgtatcaggctgatgctgcaattttagttattaattccaat
accggtgaatttgaagtaggcttagactctgggggacaaactcgtgagcatggacttctc
cttcgttcccttggaattaatccgatcattatagccattaataaattggataccgtaggt
tggagtgaaaaaaggtttgaagaaatccgatcgaaaatgaacatatttttaaagcaaata
ggttataagaatcaagatatcacctatattcctatttctggacttacaggtgataatcta
actgaaccttcaacccatttaatttattggaaaactaaatttaaaactttattacattgt
attgatgatcttaatcctcctgaacgccttcttcagaagccttttcggatgtcagtgtca
gacgtatttaaggctgaacagtcctcagggatatctatatctggtcaaattgtgagtgga
tttgtattaaaagatgataaaattttggtttgtccttcaggcgaattgggaaccgtaaaa
aacatcgctaaatctgggtttgcaggggatttcgtttcaataaatatttcgggcttaagt
gatcaactttctccagggatgatactttctgatcctcagtttccagttccgtcaagcaaa
gcacttagagcccgaatagttgtgtttgattctccaattccattaattaaaggatccgct
atggtattacattgtggtaatatatatgtacaagcttcattggcaaagttagtgtcactc
cttaataaatcgaatggacaagtaataaagaaaaaaccgcgatgtcttcctaagaattca
aatgcagttgtagaaatacaaacagaaactgctgttggattagaattgtactctgactat
agggatttgggtcgttttatgttaagatgtgatggaagaactctcgctgctggtatagtg
actcaaattttgtga
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