Lepeophtheirus salmonis (salmon louse): 121127404
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Entry
121127404 CDS
T08214
Symbol
Xpd
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm03022
Basal transcription factors
lsm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
121127404 (Xpd)
09124 Replication and repair
03420 Nucleotide excision repair
121127404 (Xpd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsm03021
]
121127404 (Xpd)
03036 Chromosome and associated proteins [BR:
lsm03036
]
121127404 (Xpd)
03400 DNA repair and recombination proteins [BR:
lsm03400
]
121127404 (Xpd)
Enzymes [BR:
lsm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
121127404 (Xpd)
Transcription machinery [BR:
lsm03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
121127404 (Xpd)
Chromosome and associated proteins [BR:
lsm03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
121127404 (Xpd)
DNA repair and recombination proteins [BR:
lsm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
121127404 (Xpd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
HBB
Helicase_C_2
ResIII
DEAD
AAA_11
nSTAND3
Motif
Other DBs
NCBI-GeneID:
121127404
NCBI-ProteinID:
XP_040578679
UniProt:
A0A0K2U3N5
LinkDB
All DBs
Position
13:complement(27966088..27969164)
Genome browser
AA seq
770 aa
AA seq
DB search
MILNVSGLEVPFPYEYIYPEQFSYMNELKSALDAGGHGLLEMPSGTGKTATLLSFIVAYM
RENPSQVSKLIYCSRTIPEIEKVIEEFKKLNTFYEEESSSIGIKPLNYVALVLSSRKNMC
INVDVCEGRDGATVDRACHSRIASHVRERYAAGDETAEICTYFEDFDLKGGRDTTLPPGA
YNLEDIKSFSKKRCFCPYFLARSVIKQANIIIYSYHYLLDPKIAEIVSKELPRNSVVVFD
EGHNIDSICIDSMSVKLTRKIMEKATASIQILEGEIHKQKEQDSLKLKEEYDKLVEGLHK
AHFERENDLILSNPILPDHVLEEAIPGNIRKAEHFVAFMKRLVEYLKTRMRVQVVVQESP
AGFLNDITKKVCIERKPLRFCAERLASLIRTLEVSHTAEFSALTLISHFATLVSTYTKGF
TLLVEPSPDDKISASNVFNPVLHFRCLDASIAIRPIFERFQSVIITSGTLSPLDMYPRIL
DFHPVVMSSFTMTLARQCILPLVVAKGNDQVALTSKFEARDDTAVIRNYGSLLTEVVGIV
PDGVVCFFTSYLYMENVAAAWYDQGVIDQIQKHKLLFIETQDAAETSLALLNYIKACENG
RGAVLLSVARGKVSEGVDFDHHLGRAVLMFGIPYVYTQSRILKARLEYLRDEFQIRENDF
LTFDAMRHAAQCVGRALRGKTDYGIMIFADKRFGRNDKKSKLPKWIQEHLGDDVCNLSTE
EAMMISKKWLRQMAQPFNREDQLGISLLTLEQLQTREMQEKIQSKVVQQL
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atgatactgaatgtgtctggacttgaggtacccttcccttatgaatatatatatccagag
caattttcttatatgaatgagctgaaatccgctctggatgcaggaggacatggtttgttg
gaaatgccttcaggaaccggaaaaaccgctactctactctcatttattgtggcatatatg
cgagaaaacccaagtcaagtctcaaagcttatttattgttcaagaacaatcccagaaatt
gaaaaagttattgaggaatttaagaaattaaataccttttatgaagaagagtcaagttcc
atcggtatcaaacctttaaattatgttgctttggttctcagctcccgtaaaaatatgtgt
atcaatgttgatgtttgtgaaggtcgagatggtgctaccgttgatcgtgcttgtcactcc
cgaattgcatcccatgttcgggaaagatatgcagcaggagatgaaactgcagaaatttgt
acttactttgaagattttgatctcaaaggaggtcgagatacaactcttcctcctggtgct
tataacttggaagacattaaatccttttctaaaaaacgatgtttttgtccctacttttta
gctagatccgtcattaagcaagcaaacatcatcatatactcctaccattaccttcttgat
cctaaaatagccgaaatcgtatcgaaagaacttcctagaaattcagtcgtagtgtttgat
gaaggccacaatattgatagtatttgtattgattctatgagtgtcaagctaacacgaaaa
attatggaaaaggcgacagcaagtattcaaatcctagaaggggaaatacataagcagaaa
gagcaagattcattaaagcttaaagaagaatatgataaacttgtagaaggtcttcataaa
gcccattttgagcgagaaaatgatctcattttatctaatcctattcttcctgaccatgtt
cttgaagaagcaatacctggaaatatacggaaagctgaacattttgtggcatttatgaaa
cgtcttgtggaatatttgaaaactcgtatgagagtacaagtcgttgtacaagagtctcct
gctggttttctcaatgatattacgaaaaaagtgtgtattgaaaggaagcccttgcgattt
tgtgctgaaagacttgcttctttaattcgaacgcttgaagttagccatactgcagaattt
agtgcacttactcttatttcccattttgctacccttgtgtctacttatacaaaaggtttt
accctcctagttgaaccatctcctgatgataaaatatctgcttccaatgtatttaatccc
gtgttacattttcggtgtctcgatgcttctatcgctattcgtcctatttttgaaaggttc
cagtctgttattatcacttctggaacgttgagtcccttggatatgtatcctagaatttta
gatttccaccctgttgtaatgagttcatttactatgacactagctcgacagtgtatcctc
ccattagttgtggctaaaggtaacgaccaagttgcactaacatcaaaatttgaggcaaga
gatgatactgcagtaattcgaaattatggttcattactcacagaagtggttggaatcgta
cccgatggagttgtttgtttttttacctcatacctctatatggaaaacgtggcggctgca
tggtatgaccaaggagtgattgaccaaattcaaaagcataaattactttttattgaaact
caagacgcagctgaaactagtttggcgcttttaaattacatcaaagcatgtgaaaatggt
agaggtgccgttcttttgtccgtagctcgaggtaaagttagcgaaggagttgattttgat
catcatttaggaagagcagttttaatgttcggtattccatacgtatatacacagtcacga
attttaaaagctcgtctcgaatatttgagagatgagtttcaaatccgagaaaatgacttc
ttgactttcgatgccatgagacatgctgctcagtgtgtggggagggctcttcgtggaaaa
actgactatggtatcatgatttttgcagacaaacgatttggtcgtaatgacaagaaatct
aaattgcctaagtggatacaagaacacctcggtgatgatgtttgcaatctttcaacagaa
gaagctatgatgatctccaagaaatggttgagacaaatggctcagccttttaaccgagaa
gatcaattaggaatatccttattaacgcttgaacaactacaaacaagagaaatgcaggag
aaaatacaatcgaaagtcgttcagcaattatag
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