Lepeophtheirus salmonis (salmon louse): 121127422
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Entry
121127422 CDS
T08214
Name
(RefSeq) ATP-dependent helicase brm
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
121127422
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsm03021
]
121127422
03036 Chromosome and associated proteins [BR:
lsm03036
]
121127422
Transcription machinery [BR:
lsm03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
121127422
Chromosome and associated proteins [BR:
lsm03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
121127422
Chromatin remodeling factors
BAF complex
121127422
PBAF complex
121127422
GBAF(ncBAF) complex
121127422
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HSA
Bromodomain
SnAC
BRK
ResIII
DEAD
HDA2-3
QLQ
NirdL-like_HTH
Motif
Other DBs
NCBI-GeneID:
121127422
NCBI-ProteinID:
XP_040578697
LinkDB
All DBs
Position
13:12896270..12901161
Genome browser
AA seq
1252 aa
AA seq
DB search
MRSEGNLVSEQMLELRAQIWSYRLLARNGSVGRSVSLGRVSDGVSVRPECAPKGLDPVTV
LSERENRLSSRVSHRMEELSAFPLNMAQDLRLKAEIELRALRLLNLQRQLRAEVLASTRR
DTTLETAINVKAFKRTKRQGLREARATEKLEKQQRVEAERKRRQRHQEYLNAILSHARDF
QNFHKNNQMKLLKTNKAVMAWHANAEKEQKKEAERLEKERLRALMAEDEDAYRKLIDQKK
DKRLAYLLSQTDEYINQLTDMVKQHKKEQKKLRKEAKKKQKLEEMVGILDESSQMSDIRI
PVKEILSGKVLRGDSAPLASELEAWLDKNPGFVELPRDEDSDEDTDDESNDIKEEEVATA
AEDVIAKAKKEDDDTNPDREDYYSIAHTVTEEITEQSSILVGGILKEYQIKGLEWLVSLY
NNNLNGILADEMGLGKTIQTIALITYLMERKKNMGPYLIIVPLSTLSNWTLEFEKWAPSA
QVVAYKGSPGLRRNIQSQMKATKFNVLVTTYEYVIKDKSVLAKIRWKYMIIDEGHRMKNH
HCKLTQILNTYYTSNNRILLTGTPLQNKLPELWALLNFLLPSIFKACNTFEQWFNAPFAT
TGEKVELNEEETILIIRRLHKVLRPFLLRRLKKDVESQLPDKVEYIIKCEMSALQRVVYQ
QMAEKGVLITEDKRDKKTSSSDKKTLRNTIMQLRKLCNHPFIFQKIEECYAKHIGLTTDI
VTGPDVYRSSGKFELIDRILPKLNKTGHRVLMFCQMTQCMTIIEDYFNFRGFKFLRLDGT
TKAEERADMLKIFNQKDSDYFIFLLSTRAGGLGLNLQTADTVVIFDSDWNPHQDLQAQDR
AHRIGQKNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQAGMFNNRSTGTERRELLQS
ILRADEGDDEEENEAPDDEVVNQMIARNEDEFELFQKMDTVRRREDTRTRLIEESELPPF
LLALEEVDEAEEKFAEVELELGRGNRARKETNYDDQLSEREWLRAVGAEEEEFEDDEHEL
PKKKGRRKKRREENEDESISLPSKKRKKKPSSTHFSIRRMQKKMKKLMEIVIRYEDQDQR
VLSDPFMKLPTAEELPDYYEVIKRPIDILKIMDRIESGKYIDMESLEKDFLLLCSNTQKY
NEDDSLIHEDSIVLQSVFINARERLDAEPDDEENDFFIEEETTLSTCSTKTLNSKEAEQS
EKVYSYDVDLSPKSTKKKYEESRGVKKRKPKKYFSDEEEFGSDNLDDDSVNV
NT seq
3759 nt
NT seq
+upstream
nt +downstream
nt
atgaggagtgaaggtaacttggtgagtgagcagatgctggagctgcgtgcccagatttgg
tcgtatcgcctgttggcccgtaacggaagtgtgggacggagtgtgtcgctggggcgcgtg
agtgatggagtgagtgtgcggccggagtgtgcacccaagggcctggaccctgtgacggtg
ctgagcgagcgcgagaaccgtctgtcgtcgcgagtgtcccaccggatggaggagctgagt
gctttcccactcaacatggcgcaggacctgcgactcaaggcggagatcgagctgcgggcc
ctccggctcctgaatctgcaacgacagctgcgtgcggaggtgttagcctccactcggcga
gacacgaccctggagacagccatcaatgtgaaagcgtttaagagaacgaagaggcaaggg
cttcgggaggctcgcgccaccgagaagttggagaagcagcagcgggtggaggctgagcgg
aagcgcagacagagacaccaggagtacttaaatgctattttgagtcatgccagggatttt
caaaattttcataagaacaaccaaatgaaacttctcaagaccaacaaagctgttatggct
tggcatgccaatgccgaaaaagagcagaagaaagaggcagagaggcttgaaaaagagaga
ttaagagccctcatggcagaggatgaagatgcttatcgaaaactgattgaccaaaagaaa
gataaacgcttggcatatcttctgagtcaaacggacgagtacattaatcaactcactgac
atggtcaaacaacacaaaaaagaacagaaaaagcttcgtaaggaggcgaagaagaaacag
aagctggaggagatggttggtattttagatgaaagttcacaaatgtctgacattcgtata
ccagtaaaagaaatattaagtggaaaagtgcttcgaggagatagtgctccattggcgtca
gaacttgaagcttggttagataaaaatccaggttttgttgagcttcctcgggatgaagac
tctgatgaggatacagatgatgaaagtaatgatattaaagaggaagaagttgcaacggcg
gcagaagatgtcattgctaaagcaaagaaagaagacgatgatacaaaccctgacagagaa
gactattactcaattgctcacactgttactgaggaaataactgagcaatccagtattctt
gtcggtggtattttaaaggaatatcagatcaaaggattggaatggttggtttctttatac
aacaacaatttaaatggtattttagctgatgaaatgggtcttggcaagaccattcaaaca
attgctctcattacctatttgatggagagaaaaaaaaatatggggccttaccttataatc
gttcctctttcgacactttcgaactggacattagaattcgaaaaatgggctccgtctgcc
caagtggttgcctataagggatctccaggattacgaagaaatattcaaagtcaaatgaag
gctaccaaatttaacgtactagtaacaacgtacgagtatgtcattaaggataaatctgtg
ttggctaagattcgatggaagtatatgataattgatgaaggacatagaatgaaaaaccat
cattgcaagttgactcaaattcttaatacatactatacttcaaataatcggatactatta
actggaactccacttcaaaataaactccctgaattgtgggctcttcttaattttttactc
ccctcaattttcaaagcttgtaatacatttgagcagtggtttaacgctccgttcgctaca
actggtgaaaaagttgaactgaatgaggaagaaaccattttaattattcgtcgattacac
aaagttttaagaccctttcttctaaggagacttaagaaagatgtagaatctcagcttcca
gacaaagtggagtatataatcaaatgcgagatgtctgctcttcaaagggttgtttatcaa
caaatggctgagaaaggtgttctaattacggaggataaaagagataaaaagacaagttca
tctgataaaaaaactttaaggaatactataatgcaactgaggaaactgtgtaatcaccct
tttatttttcaaaagattgaggagtgctacgcgaagcacattggtctcacaacagatatt
gttactggtcctgatgtatatcgttcctctgggaaatttgagttaattgatcggattctt
cctaagcttaataaaactggacatagagttcttatgttttgtcaaatgactcaatgtatg
accattattgaagattactttaattttagaggatttaagtttttaagacttgatggaaca
acaaaggcggaagaaagagctgatatgttaaagatttttaatcaaaaggattccgattat
ttcatatttctattatcaactagagctggagggcttggcttgaatttgcaaactgcagat
acagtggttatatttgattctgattggaatcctcatcaagatttacaagcccaagataga
gcacatagaattggccaaaaaaatgaggttcgggttcttagattgatgactgtcaattcg
gtcgaagaaagaatcttggctgcggctcgatacaaacttaacatggatgaaaaagtcatc
caagctggtatgtttaataacaggtcaactggtactgagaggcgagaacttttacaaagt
atattgagggctgatgagggagatgatgaagaagaaaacgaggctcctgatgatgaagtc
gtgaatcaaatgatagctagaaatgaagatgagtttgaattattccagaaaatggatacc
gttcggcgaagagaagacacaaggaccagacttattgaagagagtgaactccctcccttt
cttctagcattagaagaagttgatgaagcggaagaaaagtttgcagaagttgaattggaa
cttgggcgaggaaatagagctcgaaaagaaactaattatgacgatcaactttcagagagg
gaatggttgagagcagttggggccgaagaagaagaatttgaggacgatgagcatgaactg
cctaagaagaaaggaagaagaaaaaagcgacgagaagaaaatgaagatgaaagtatttca
ttgccgtcgaaaaaacgcaaaaaaaaaccgtctagtactcacttcagcattcgcagaatg
caaaaaaaaatgaaaaagttaatggagatagttataagatacgaagatcaggatcaaaga
gttctaagcgatccttttatgaaattgcctactgcagaagaattgccggactattatgaa
gtaattaaacgtccaattgatatattaaagatcatggatagaattgagagtggaaagtat
attgatatggagtctctagaaaaggactttctgctactttgttctaatactcagaagtat
aatgaagacgattctttaattcatgaagattctattgttcttcagtctgtttttattaat
gcaagagaaagacttgatgctgaacctgatgacgaggaaaatgatttttttattgaagaa
gaaacaaccttatccacttgtagtacaaaaactttaaactcgaaggaagcagaacaatct
gagaaagtatatagctatgatgttgatttatccccaaagtcgacgaaaaagaaatatgag
gaatctcgaggagtgaaaaaaaggaaacctaaaaagtatttttctgatgaagaagaattt
ggctccgataatttagatgatgatagtgtcaatgtttaa
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integrated database retrieval system
