Lepeophtheirus salmonis (salmon louse): 121127508
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Entry
121127508 CDS
T08214
Symbol
Vps8
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
121127508 (Vps8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lsm04131
]
121127508 (Vps8)
Membrane trafficking [BR:
lsm04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
121127508 (Vps8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
VPS8_N
Clathrin
TPR_VPS8_2
zf_RING_Vps8
zf_RING_Vps8_fungal
Hikeshi-like_C
Beta-prop_WDR3_1st
zf-RING_Vps41
Beta-prop_EML_2
Motif
Other DBs
NCBI-GeneID:
121127508
NCBI-ProteinID:
XP_040578830
LinkDB
All DBs
Position
13:complement(8872985..8877888)
Genome browser
AA seq
1383 aa
AA seq
DB search
MDSQREDEGGDDSLEDLDDFEYDLPPVDETPDLEDLLAASDEIVVGFHDFAEEDVSNTGL
LFDENAGEVVPSAFHLDNISLMSKGSLNSELSSLSECKGKYRGVLSKKNTPKHLNYIKHI
VLKGISSQMASASDRVNAGIPVVTDSSSALIAVGTSRGYILIFDSQQVLKWSLGGTNFGS
EYGSVSALAFNLSSTRIIAGFAKGHLLEFDLLTGRQLRDLNETHPLGYAITHLFYTDDPS
VAVFADSGGSVYEISMKKTFGLRGFKSRCIFSGSRGEVCSMAPLRLIDYPENRFIEESII
ALASISKVIILSIRPKMRVLFNHPLHGAPTTLPLLSWHFVVIQTSYSDKVVDPVLAFGRE
STVLFFQMSENLSGKIIFIPLSKIELDYVLMSMGWLNSRCLGILDASETFHLYDVRGKEN
LDSFDISDVGLSYGSSFFKGLATGGNVSAALALAGERAVYGSCHFIQNQVLLLGRKGFHT
LIIRNWKERIDHLIKSNHYIEAFELGQSFYEDHGKALIGLKGSKEKRKKMVANKVCSTLF
KFLHVSMTTNFPQEGNMRVLTEYFSEIVPPCVRVCVIFRRKDLLYHNVWETFLVDPFSKA
LFLESLEVFILNDKLRDLPVSIFQEYVIHFEKTKRFQALEASITHLEITSMDIHQVINSS
WKYKLYDALLYVYNNGMLDFVTPFEELMVELMTSMKANEKDLPPHSVELGNKILVYVSCC
LAGRAYPYGDIEESSVSEVKYRVYSILTALHTKSAPNEESFYPYLRTLLQFDTQGLLNVV
AIAFEEKEFQGEMGSCQKQRLIDILLKIMVKDDSEYSPSQIGNLFVFLARQIAKDPKGLD
VSRDLLDRVLEVLTQKPSDDKYLSYAKEERQQALFEMIRLGNSWVTYFDKDKLVRRCEQA
GFYRILEAIYQEDKEIDKILECYLFDEVRKRQVFSFIEKTFTIGSEEEKKLLREKMFIEF
TSLIKIDPKKAVASIYSSYKSEDLFASLEEPELKYQFLKYLIEDCDSVDISFELYQSYAE
LMFLLFPSFLPSYLKSSKTQNYDARKLSKMCKEYNKSHEEVNWSLIESEVYLLCILDESM
EGFEVLRGSFDKVVTQTIENLSSSEEVSLGLSLISDHCQSTFPRLHEEERESIWASFLET
LMAPQRNSNDSEVQNIFKPLVKRLVNCCTGFIPLRTMIKKILQDPLYAEASLLEIKDFLF
EMLSMYHYEETLLVSTKSLVRGDLHSCLGELMTLSNRGLRVNSEKCSLCSVYLGRSMPEL
SIAFHCYHGYHLNCLVKSGCFNNKANLYQCYICLKSSGVNYSSATKRVSVQIADSEGDSK
SISLVTEAADSNQTVNEVTNRRVTNALNYLNSFKPPDAIHNVSIFDEESYHLRTSPGSYI
PFD
NT seq
4152 nt
NT seq
+upstream
nt +downstream
nt
atggattcacagagagaagatgaaggtggagacgactctttggaggatctggatgatttc
gagtatgatcttcctccagtggacgagactcctgatttagaggatttgttagcagcgagt
gacgaaattgtagtgggattccatgattttgcagaggaagatgtctcaaatacgggatta
ttgtttgacgaaaatgcgggtgaagttgttccctctgcttttcatttagataatatttct
cttatgtcaaaaggtagtctcaactcggaactgtcttccttatccgaatgcaaagggaaa
tatcgtggagtcctttccaaaaagaacactccaaaacatttgaactatatcaaacacatt
gttcttaaaggaatttcatctcaaatggcgtctgcttcagatagagtgaacgctgggatc
cctgtggtcacagactcttcttctgcacttattgctgttggaacgtccagaggatacatc
cttatttttgacagccaacaagtattgaaatggtctcttggtggaacaaactttggatct
gaatatggatctgtgtctgctcttgcttttaatttatcatctacacgtattattgctgga
tttgcgaaaggacatctattggaatttgatcttcttactggaagacaactcagggattta
aatgaaactcatcctttaggatatgcaattactcatttattttatacggatgatccgtcg
gtcgcagtatttgcagattcaggtggttctgtatatgagatctcaatgaaaaaaactttt
gggctacggggtttcaaatctcgatgtattttctcaggatctagaggagaagtgtgctcc
atggctccacttagactcatcgattatccagaaaaccgtttcattgaagagtccattatt
gctcttgcttctatatccaaagttatcatcttgtctattcgtccaaaaatgcgtgttctt
tttaatcatccacttcacggtgcacccaccacacttcctttattgtcctggcactttgta
gtcattcaaacttcatattcggataaagtcgtggatccagtccttgcctttggccgcgaa
tcgactgttctcttctttcaaatgtccgagaacttgtcaggaaaaattatttttattcca
ttatccaaaattgaactagattatgtgttgatgtctatgggctggttaaactcccgatgt
cttggtatccttgatgcgtctgaaacttttcacctttacgacgtaagagggaaagaaaat
ttagacagtttcgatattagtgatgtaggactctcatatggaagtagtttttttaaaggt
ttagcaactggaggaaatgtaagcgctgctcttgcacttgctggagaacgagctgtctat
ggctcttgccattttattcaaaaccaagttctactacttggtcgaaagggttttcataca
ctcataattagaaattggaaagaacgcatcgatcatcttataaaatctaatcattatata
gaagcctttgagctgggtcagagtttttacgaggatcatggaaaagcccttattggtcta
aagggctcaaaagaaaaaaggaaaaaaatggtggcaaataaagtatgctctactctcttt
aaatttttacacgtatccatgaccaccaatttccctcaagagggaaatatgagagtatta
actgagtatttttccgaaatagttccaccctgtgtacgtgtttgtgttatttttcgccgt
aaggatctgctttatcacaatgtttgggaaacttttttagttgatcctttttctaaagca
ctgtttttagaaagtttagaagtatttattttaaatgataaactaagggacttgcctgtc
tctatttttcaagaatatgtgattcattttgaaaaaaccaagaggtttcaggccttggaa
gcatcgatcactcatttggagataacttccatggacattcatcaagttattaattcatct
tggaagtataaactatatgatgctttgctctatgtgtacaataatggaatgttagacttt
gttactccttttgaggagctaatggttgaactaatgacatcaatgaaagctaacgagaaa
gatctacccccccattcagtggaattaggaaataaaatacttgtgtatgtgtcctgttgc
ttagctgggagagcgtacccatatggagacattgaagaatcttccgtgtcagaggtgaaa
tatagagtgtactcaattttaactgcattgcatacaaaaagtgcacccaatgaggaatct
ttttatccgtatctaagaacccttctacagtttgatactcaaggtcttctaaatgttgta
gcaattgcttttgaggagaaggaatttcagggagaaatgggatcttgtcagaagcaacgc
ctaattgacattctcttaaaaatcatggtaaaggatgattccgaatattccccatctcaa
attggtaatttatttgtatttttggccagacaaatcgctaaagacccaaagggccttgat
gtttcaagagatttattggaccgtgttttagaagttcttacacagaaaccaagtgacgat
aagtacctttcgtatgcaaaagaagaaagacagcaagctctttttgaaatgattcgtctt
gggaatagttgggtcacatatttcgataaagataagttagtaaggaggtgtgaacaagct
ggattctacaggattttagaagccatttatcaagaggacaaagaaatagacaaaatactg
gaatgttatctgtttgatgaggtgcgaaagagacaagttttttcgttcattgaaaaaact
ttcacaattggttcagaagaagaaaaaaaactactccgagaaaaaatgttcattgaattt
acatcactcataaaaattgatccaaaaaaggctgttgcttccatttattcaagttacaaa
tccgaggatctatttgcttcactagaagaaccagaattaaagtatcaatttttgaaatat
ttaatcgaggattgtgattctgtggacatttcttttgaattgtaccagtcttatgcagaa
ttaatgtttttacttttcccttcctttttaccatcttatctcaaaagctctaaaacacaa
aactatgatgcaagaaaattgtccaaaatgtgcaaagaatacaataagtctcacgaggaa
gttaattggtcactgatagaatcggaagtatacttattgtgtattttagatgagtccatg
gaaggatttgaagttctacgtggatcatttgacaaagttgtaacacaaacgattgaaaac
ttatcctcaagtgaagaagtcagtctgggtctttcccttatctctgatcactgccaaagt
acctttcctcggttacatgaagaggaaagagaatccatatgggcttcttttcttgaaact
ttaatggctcctcaaaggaactctaatgactctgaagtccaaaacattttcaaacccttg
gtaaaaagactagtgaattgttgtactggtttcattcctttacgtacaatgattaaaaaa
atactccaggatccactttatgctgaagcgtcgctactcgaaataaaagactttctgttt
gaaatgttatctatgtatcactatgaagaaacacttctagtgtctactaagagtttggtg
agaggtgacttgcattcatgtttgggggaattgatgacgttgtcgaatcgtggtttgaga
gtcaactccgaaaaatgctccctttgttccgtatacttggggagatccatgccagagtta
tctatcgcctttcattgctatcatggatatcatttgaattgtctggttaaatctggctgt
tttaacaacaaagcaaatttgtatcagtgttatatttgtctcaaatcatcgggggtgaat
tattcctctgcaacaaagagagtttctgttcagattgctgactctgaaggagattccaaa
tcaatttctctggttactgaggcagctgattcgaatcaaactgtcaatgaagtgacaaat
cggagggttaccaatgcattaaattatttaaatagttttaagccaccagatgctattcat
aacgtatctatcttcgatgaggagagctatcatttaagaacaagccctggatcttatatc
ccatttgattaa
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integrated database retrieval system
