Lepeophtheirus salmonis (salmon louse): 121127525
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Entry
121127525 CDS
T08214
Name
(RefSeq) nucleoporin NDC1
KO
K14315
nucleoporin NDC1
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121127525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsm03019
]
121127525
Messenger RNA biogenesis [BR:
lsm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
121127525
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ndc1_Nup
Motif
Other DBs
NCBI-GeneID:
121127525
NCBI-ProteinID:
XP_040578857
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Position
13:complement(14916747..14918988)
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AA seq
491 aa
AA seq
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MKDPQKITDCVGSEVLWWKWFSSLFWSLFFQFGGLFTLNSCLLYPSHWIYDGIIVLCLSG
ILSDYYEAFWGMPFARMRKAGSLILHGVGGSLLLWTYGQCYGVSDSFITFSGAYFGIWKW
YQVQIERESPYIFEFPWLQIPKKSLIRSEFPSLLKHSVIDVLSHLRFCVPLSIALFDRPE
SDWTSYLWSLAYLSLTSWLLNTLLLTTLEIQHLILNSYLTEPTSFSLHHLLPAMEPKHNI
PLLRHLACQDFALSANTSPSRRTTFFTLSQPGGHPYNWNSIRTQCEVAINDFTESLLKIT
NPKKESPPQIQSPQPISDLRMRRLVNPPVPKSTPALEKKVEKLPVAVPSRSVSKIVKDKI
TSLTAIPDAVRVRSVFAQHSETLMWIIEGLSSLIAHSVKEDRYGVVQKDLSNVLSLFFNL
QQVIERHKGMAVNARKNKSETKDSHIKNSLRNTLKKCLYRITIAYKDNISDIPGLSIEHQ
QKMKNFHAFME
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatccccaaaaaataacggactgtgttggctctgaggtcttgtggtggaaatgg
ttttcctccttgttttggagtctgtttttccagtttggcggtctttttacattgaattcc
tgtctcttgtacccgagccattggatctacgatggaatcattgtgctctgtctgagtggg
attctaagtgactactatgaagccttttggggaatgccttttgcgagaatgaggaaagct
ggaagcttgattcttcacggagtgggcggttccctgctcttgtggacctatggacaatgt
tacggagtctctgattcattcattacattctcgggggcctacttcgggatttggaaatgg
taccaagtgcagattgagcgagaatccccctacatttttgaatttccatggttgcaaatc
ccgaaaaagtctctgatccgctccgaattcccttccctcctcaaacactcagtaattgac
gtcctttcacatcttcgcttctgtgttcccctctctattgctctgtttgatcgtcctgag
tcggattggacctcctacctctggtctcttgcatatctctccttaacatcttggctcctc
aacacgctcctcctcactacactagagattcagcacctcattctcaactcttacctcacg
gagcccacttcattctcgctccatcacctactccctgccatggaaccaaaacacaacatc
cctcttttacgacatctcgcatgccaagactttgctctctctgcgaatacatctcctagt
cgccgaaccacattcttcactctgagtcagcctgggggacatccttacaattggaacagt
atccgtactcaatgtgaagtagctatcaatgactttacagagtctttactcaaaattaca
aacccaaaaaaggagtcacctcctcagattcaatctcctcaacccatatccgatctaaga
atgagacgtttagtaaaccctcccgttcctaaatcaacacccgctttagagaaaaaggtt
gaaaaactgccggtcgccgtaccttctcgaagtgtatctaaaattgttaaggataaaata
acaagcttaactgctatccctgatgccgtacgtgtgcgtagtgtatttgctcaacattca
gagactcttatgtggatcattgaaggtttatcaagcttaatcgctcattcggtcaaagag
gatcgctatggcgttgttcagaaggatttgtcaaatgttttgagtttatttttcaacctt
caacaagtcattgagcgtcataagggtatggccgtgaatgcccgaaaaaacaagagtgaa
accaaggattctcatataaaaaatagccttcgaaacactcttaaaaaatgtttatatcgc
ataacaattgcttataaggataatatctcagatatccctggtctgtccatcgagcatcag
caaaaaatgaagaattttcacgcatttatggaataa
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