Lepeophtheirus salmonis (salmon louse): 121127527
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Entry
121127527 CDS
T08214
Symbol
Hel25E
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm03013
Nucleocytoplasmic transport
lsm03015
mRNA surveillance pathway
lsm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121127527 (Hel25E)
09122 Translation
03013 Nucleocytoplasmic transport
121127527 (Hel25E)
03015 mRNA surveillance pathway
121127527 (Hel25E)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsm03019
]
121127527 (Hel25E)
03041 Spliceosome [BR:
lsm03041
]
121127527 (Hel25E)
Enzymes [BR:
lsm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121127527 (Hel25E)
Messenger RNA biogenesis [BR:
lsm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
121127527 (Hel25E)
Spliceosome [BR:
lsm03041
]
Complex C
Other components
EJC/TREX
121127527 (Hel25E)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
121127527 (Hel25E)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
121127527
NCBI-ProteinID:
XP_040578860
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All DBs
Position
13:complement(10957414..10960455)
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AA seq
426 aa
AA seq
DB search
MAEVEADLLDYEEEDTTTTAVTTETNGAEHKKEVKGTYVSIHSSGFRDFLLKPEILRAIG
DCGFEHPSEVQHECIPQAVLGMDILSQAKSGMGKTAVFVLATLQQMEPVDGQVSVLVMCH
TRELAFQISKEYERFSKYLPGIKVGVFFGGLAISKDEQVLKSNCPHIVVGTPGRILALVR
SKKLNLKHTKHFILDECDKMLEQLDMRRDVQEIFRNTPHEKQVMMFSATLSKEVRPVCKK
FMQDPMEVYVDDEAKLTLHGLQQHYVKLKDTEKNRKLFELLDVLEFNQVVIFVKSVQRCV
ALAQLLIEQNFPAIAIHRGMSQEERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVFN
YDMPEDTDTYLHRVARAGRFGTKGLAITFVSDESDAKTLNEVQDRFEVDITELPDEIDLS
TYIEGR
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atggccgaagtagaagcagatctcttggactatgaggaggaagataccaccaccactgca
gtgactactgagaccaatggagccgagcataaaaaagaggttaaaggaacatatgtttct
attcacagttcgggcttccgagactttcttctcaaacctgagattttgagagccatcggg
gactgcggttttgaacatccatctgaagttcaacatgagtgtattccacaggccgttctg
ggaatggatattctttctcaggccaagtctggtatgggtaagactgctgtgttcgtgttg
gccactcttcagcagatggagccggtggatggacaagtctcagttctcgtcatgtgtcac
acgcgcgaacttgcatttcaaatctcgaaagagtacgaaagattttccaaatacctcccc
ggtatcaaggtcggcgttttcttcggtggtcttgccatcagcaaggacgaacaagttttg
aaatccaactgcccacacattgtggttggcactcccggacgtatacttgctcttgtaagg
agtaaaaaattgaatctgaaacacactaagcactttatcctcgatgaatgtgacaaaatg
cttgagcaattagatatgagaagagatgtccaagagatcttcagaaatactcctcatgaa
aaacaagttatgatgttttctgctactttaagtaaagaagttcgaccagtgtgcaaaaag
tttatgcaagaccccatggaagtttatgtcgacgatgaagccaaattaacacttcacggt
cttcaacaacattacgtcaagcttaaggataccgagaagaaccgcaagctcttcgagtta
cttgatgtcttggagtttaatcaagtcgttatatttgttaagtcggttcagcgttgcgtc
gctcttgctcaacttctaatagagcaaaactttcctgcgattgctattcataggggtatg
agccaggaagagcgtttatctcgctatcaacaatttaaggatttccagaagcgtattcta
gtcgccaccaatctcttcggacgagggatggatattgagagagtcaatattgtatttaat
tatgatatgcctgaagatactgacacttatttacatagagttgcacgtgctggtagattt
ggtaccaagggtcttgctattacatttgtatcggatgagtctgatgccaaaacactcaat
gaagtacaagacagatttgaagttgatattacggaactacctgatgaaatagacttatca
acatatattgaagggcgataa
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