Lepeophtheirus salmonis (salmon louse): 121127721
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Entry
121127721 CDS
T08214
Symbol
Vps16A
Name
(RefSeq) vacuolar protein sorting-associated protein 16 homolog isoform X1
KO
K20180
vacuolar protein sorting-associated protein 16
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm04140
Autophagy - animal
lsm04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
121127721 (Vps16A)
04148 Efferocytosis
121127721 (Vps16A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lsm04131
]
121127721 (Vps16A)
Membrane trafficking [BR:
lsm04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
121127721 (Vps16A)
Hops complex
121127721 (Vps16A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps16_C
Vps16_N
Beta-prop_WDR35_TULP_N
Motif
Other DBs
NCBI-GeneID:
121127721
NCBI-ProteinID:
XP_040579137
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Position
13:complement(36524288..36527850)
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AA seq
731 aa
AA seq
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MWEGGGSAIHITEASGREISPIRKISNFEVFDAGWTDKETPILLTQDGTVYLYDLFGDEL
LKKFNLGSEVKDTKVRSCQFFDRDKSGTGIAVLTNSYRFFYVNSILGSPTPRIRRMPDVH
LEDPLVWTLFFEADERTPKILVSSKGGEDLVLISPGGSSLLLLEEGSGYGVVTHMETSFD
RQKLVVVFSSGLVWIGSANEKLTKIASYKLDFNEVSKVAWCSSDAVVVFPADDSSPVIVT
VKGSGEMIFILGFIACVQEVDGLRIFSRSCGQELLQPVPKIVEETFKIGSISSSAMLHLA
SEEFRNKSYKADEYLRMVMPELGTAVSKCIKTAGYMFNTYHQKSLMKSAQFGKAFITLVQ
THSDSFPKMCKTLRVLNALRNVRIGIPLTITQYETLTPAVVIDRLLARRLYPIAAKMCTH
LDIPQKDGINRVMAHWACYKVSIQEDNSSTAREIHLKLGTHPSISYCDIASKAADYGKNE
LAFRLLEHEVRVVRQIPLLMKLGKESEALAKALATGDRDLAFLVIFKLKQKLNSSDFHML
IRKYPLGKVIYQNYCQQYDLDALNDWYVQEDDFPALASDSFRRAWESSRQEERLAILVQS
TENFRKGKGVELCGYVNDSSKLLRLQDNLEGKMETCFIGKSLHETVSDLIKLDDMKTAEK
VKSEFKIPDKRFIYLKLSAWAEGGKWSDIKSIAKQKKPPLPISSILKIVHRFGGDAKVKE
FNAENIIVKTN
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atgtgggaggggggtgggagtgccattcacatcacagaggcttcaggaagggaaatatct
cccattcggaagatctctaattttgaagtctttgatgcgggatggacggacaaagagact
ccaatccttttgacacaggacggaaccgtttatctctacgatctctttggtgatgaactc
cttaaaaagtttaatcttggctctgaagtgaaggatactaaagttagatcctgtcaattc
tttgatcgtgataaatctggtacagggattgctgtactcacaaattcataccgatttttt
tatgttaattctatactgggttcccctacaccaagaattcgtagaatgcctgatgttcat
ttagaggatcctcttgtatggactctgttttttgaagctgacgaacggacgcccaaaatc
cttgtttcctcaaaaggaggagaggatctggtattgatttctccaggtggaagttctctg
ttgttattagaagaaggttctggatatggagttgttacacatatggagacttcatttgat
cgacagaaattagtcgttgttttttcgtcgggcttggtttggattgggtctgctaatgag
aaactaacaaaaatagctagctataaattagactttaatgaagtgtccaaagtggcgtgg
tgctctagcgatgccgttgttgtatttcctgcagatgattcctctcccgtcattgtcaca
gtaaaaggttctggagagatgatttttattttgggttttatagcctgtgttcaagaagtg
gatggcttaaggatttttagccggagttgtggtcaggaattacttcagcctgtacccaaa
attgtggaagaaacatttaaaattggttcaatttcttcttctgccatgttacatcttgca
tctgaagagtttaggaacaaaagttataaagctgatgaatatcttagaatggttatgccc
gaattaggaacagcagtgtccaaatgtattaaaacagcaggatacatgtttaatacctat
catcaaaagtccctaatgaagagtgctcaatttggaaaggcattcattacacttgttcaa
acacattccgacagttttcctaaaatgtgcaaaaccttaagagtgttaaacgcattgaga
aacgttcgaataggaatacctctcaccataactcagtatgagactctgacacctgcagtt
gtaattgatcgacttcttgcgcgtcgattatatccaattgcggcgaaaatgtgtacacat
ctggatattcctcaaaaagatggaattaatcgtgtcatggctcattgggcttgttataag
gtatctattcaagaggataactcgtctacagctagagaaatccatttaaaactgggaact
catccctctatctcatactgtgatattgcctctaaagcagcggactatggcaaaaatgaa
ctcgcctttcgattacttgagcatgaagttcgtgttgtgaggcaaattccattattgatg
aaattaggcaaagaatcggaggcacttgccaaagcgcttgcaactggagatcgggattta
gctttcttagtcatttttaaattaaaacaaaagttaaattcatcggactttcatatgttg
atacgcaagtatcccttaggtaaagtaatctatcaaaattactgtcaacagtacgattta
gatgctttaaatgactggtatgtccaagaagatgactttcctgccttagcgagtgattcc
tttcgaagagcatgggaatcatctcgccaagaagagcgcttagctatccttgttcagtca
acagaaaattttagaaagggaaaaggcgttgaactttgtggctacgtaaacgattcctca
aaacttcttcgtttacaagataatttagaggggaaaatggaaacttgcttcattggaaag
tcgttgcatgaaactgtgtcggatttgattaaactggatgacatgaaaacagcagagaaa
gtcaaatccgaattcaaaatcccggataaacgatttatctatttgaaattgtcagcttgg
gctgagggagggaaatggagcgacatcaagagtattgcaaaacaaaagaaaccacctctc
cctattagctccatattgaagattgttcatcgttttggaggtgatgcaaaagtcaaagag
ttcaacgctgagaatattattgtcaaaactaattaa
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