Lepeophtheirus salmonis (salmon louse): 121129142
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Entry
121129142 CDS
T08214
Symbol
me31B
Name
(RefSeq) ATP-dependent RNA helicase me31b
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121129142 (me31B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsm03019
]
121129142 (me31B)
03036 Chromosome and associated proteins [BR:
lsm03036
]
121129142 (me31B)
Enzymes [BR:
lsm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121129142 (me31B)
Messenger RNA biogenesis [BR:
lsm03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
121129142 (me31B)
mRNA degradation factors
5'-3' decay
Decapping complex
121129142 (me31B)
Chromosome and associated proteins [BR:
lsm03036
]
Eukaryotic type
Gene silencing
piRNA pathway
121129142 (me31B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
DS
AAA
EVA_Class_A
Motif
Other DBs
NCBI-GeneID:
121129142
NCBI-ProteinID:
XP_040580757
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All DBs
Position
14:complement(7541427..7545360)
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AA seq
437 aa
AA seq
DB search
MAATAATSIMPAISQLKDKKNGSMEGWKAKLDIPPRDNRKRTSDVTATKGNEFEDFCLKR
ETLMGIFEKGWEKPSPIQEASIPVALSGRDILARAKNGTGKTGAYSIPILEQIDPSNDVI
QGMIIVPTRELALQTSQICIELSKHRNVKVMVTTGGTNLKEDIMRIYEKVHLVVATPGRI
LDLIEKGVAKVMNCKVICLDEADKLLGHDFKGMLDRLIEHLPERRQILLYSATFPLTVEY
FMKRHMKSPYEVNLMDELTLKGITQYYAFVQERQKVHCLNTLFTKLQINQSIIFCNSTQR
VELLAKKITELGYSCYYIHAKMAQTHRNRVFHDFRAGLCRNLVCSDLFTRGIDIQAVNVV
INFDFPKMAETYLHRIGRSGRFGHLGIAINLITYDDRFLLHRIEGELGTEIKPIPKVIEP
ALYVAEAHLEEPEEQQQ
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atggctgccaccgcagcgacaagtataatgccggccatttctcagctgaaagacaagaag
aacgggagcatggaagggtggaaagccaaactggatattccccctcgggacaacaggaag
agaacgagcgacgtgacagccaccaaaggcaatgagtttgaagacttttgtctgaagcga
gaaacgctaatggggatattcgagaaagggtgggaaaagccgagccccattcaagaggcc
agcatccccgtggcactgagtggcagagacatattggccagggcaaaaaacgggactgga
aagactggcgcctattcgatccccattttagagcagatcgacccaagcaacgatgtgatt
caaggaatgataatcgtgcccacgagagagttagccctgcagacgagtcagatttgtatc
gaattaagtaagcataggaacgtgaaggtcatggtcacgactggtggaacgaatttaaag
gaagacataatgcggatttacgaaaaagtgcatctggttgttgccactcctggtcgtatt
ctggatctgatcgagaaaggagtcgccaaagtaatgaattgtaaagtaatatgccttgat
gaagctgataaattattaggccacgatttcaaaggtatgctcgatagacttatcgagcat
ttacctgagcgaagacagattctgctttactccgccacatttcctctgactgtagaatat
tttatgaaaagacatatgaagtctccctacgaagttaatttgatggatgaactgacacta
aaaggaatcactcagtactatgccttcgttcaagagaggcaaaaggttcattgtttgaat
acactgtttacaaaattacagataaatcaaagtattatattttgcaactcaacgcaacgt
gtagaactattggctaagaaaattacggagttgggctattcatgctattatattcacgcc
aaaatggcgcagacgcaccggaacagagtctttcatgacttcagagctggtttatgtcgt
aatttagtttgctccgatttatttaccagaggaattgatatacaagctgtgaacgtagtc
attaattttgactttcccaaaatggcagaaacttatcttcacaggattggtagatctggt
cgttttggtcacttgggtattgccattaatcttattacttacgatgacaggttccttctt
catcgcatagaaggtgaacttggaacagaaataaaacctataccaaaggtaatcgaacct
gcactctatgtggcagaagctcatttggaagaacctgaagagcaacaacaataa
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