Lepeophtheirus salmonis (salmon louse): 121130188
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Entry
121130188 CDS
T08214
Symbol
RfC4
Name
(RefSeq) replication factor C subunit 2
KO
K10755
replication factor C subunit 2/4
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm03030
DNA replication
lsm03410
Base excision repair
lsm03420
Nucleotide excision repair
lsm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
121130188 (RfC4)
03410 Base excision repair
121130188 (RfC4)
03420 Nucleotide excision repair
121130188 (RfC4)
03430 Mismatch repair
121130188 (RfC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lsm03032
]
121130188 (RfC4)
03036 Chromosome and associated proteins [BR:
lsm03036
]
121130188 (RfC4)
03400 DNA repair and recombination proteins [BR:
lsm03400
]
121130188 (RfC4)
DNA replication proteins [BR:
lsm03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
121130188 (RfC4)
DNA Replication Termination Factors
ELG1-RFC complex
121130188 (RfC4)
Chromosome and associated proteins [BR:
lsm03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
121130188 (RfC4)
DNA repair and recombination proteins [BR:
lsm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
121130188 (RfC4)
Check point factors
HRAD17(Rad24)-RFC complex
121130188 (RfC4)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
AAA_16
AAA_22
AAA_14
AAA_lid_RFC1
RCF1-5-like_lid
Rad17
nSTAND_NTPase5
nSTAND3
AAA_11
AAA_19
AAA_18
Mg_chelatase
RuvB_N
SLFN-g3_helicase
AAA_5
AAA_assoc_2
MeaB
AAA_24
Viral_helicase1
NTPase_1
DNAX_ATPase_lid
IstB_IS21
AAA_30
AAA_28
AAA_23
ResIII
RNA_helicase
AAA_25
CbiA
ABC_tran
ATPase_2
AAA_29
Motif
Other DBs
NCBI-GeneID:
121130188
NCBI-ProteinID:
XP_071749765
LinkDB
All DBs
Position
Z:complement(12479946..12481355)
Genome browser
AA seq
332 aa
AA seq
DB search
MVEDKRRETAPWIEKYRPKTFDDIVGNSETVSRLTTFAHDGNAPNIIISGPPGVGKTTTI
LCLARALLGSSFKEAVLELNASNERGIDVVRNKIKMFAQQKEGFVDFFVTLPPGRHKIIV
LDEADSMTEAAQQALRRTMEIYSDTTRFCLACNASEKVIEPIQSRCAMLRYSKLSDAEIL
AQVLKVCEKEDISYTSDGLEAIVFTAQGDMRQALNNLQSTHDGFGQIDSKNVFKVCDEPH
PLLVKDMLSNCTEGKIDEAYKVLSHLWRLGYSPEDIISNIFRVCKTHPMAEYLKLEFIKE
IGQAHMKIVHGSNSLLQLSGLLAKLCNVTVKY
NT seq
999 nt
NT seq
+upstream
nt +downstream
nt
atggttgaagataaaagacgggaaactgctccttggatcgaaaaatatcgtccaaaaaca
tttgatgacattgtgggaaactcagaaacggtttcacgcctcacaacatttgcacatgat
gggaatgctcctaatattatcatatccggacctccaggagtgggtaaaacaacaacgatc
ctatgtttggctcgagctttgctaggaagttctttcaaggaggctgtattggagttgaac
gcctcgaatgagagaggaattgacgttgttcggaataaaattaaaatgtttgcgcagcaa
aaggaaggttttgttgatttttttgtcactttacctccaggaagacataagatcattgtt
ttagacgaggcagactccatgacagaagctgctcaacaggcccttcgacgaaccatggaa
atatactctgacacaacacgcttttgtcttgcatgcaatgcttctgagaaagtaatcgag
cccattcaatcacgatgtgccatgcttcgctactccaaactatcagacgcagagatatta
gctcaagtcttgaaagtttgtgaaaaagaggatatatcatatacatcagacggccttgaa
gccattgtatttacagcacagggggatatgagacaggccttgaataatctacagtccact
catgatggcttcggtcaaattgactccaagaatgtattcaaagtatgtgatgaaccacat
cccttgcttgttaaggatatgctaagtaattgcacggagggtaaaattgatgaggcctac
aaggttttgtctcatctttggagattgggttactctccagaggatattatttctaatata
ttccgtgtctgtaaaacacatcctatggctgagtatttgaagcttgaatttattaaggag
attggtcaggcgcacatgaagatcgttcatggttctaatagtttacttcaactctcggga
ttgcttgcgaaactatgcaatgtcactgtcaaatattaa
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