Lepeophtheirus salmonis (salmon louse): 121130404
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Entry
121130404 CDS
T08214
Symbol
SMC6
Name
(RefSeq) structural maintenance of chromosomes protein 6
KO
K22804
structural maintenance of chromosomes protein 6
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lsm03400
]
121130404 (SMC6)
DNA repair and recombination proteins [BR:
lsm03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
SMC5-SMC6 complex
121130404 (SMC6)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
SMC_N
AAA_23
AAA_21
Motif
Other DBs
NCBI-GeneID:
121130404
NCBI-ProteinID:
XP_040582099
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Position
1:43732500..43737210
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AA seq
1062 aa
AA seq
DB search
MKRPAEEDSQQRVSKSLRGEKEDWERLPGMIEKVVLKQFMCHQEFVYSPTRRVNFVAGQN
GSGKSAVLTGILFGLGGKAKDLGKSSLKDLIREGSNGCSVEVSLMNQGENGYRYEDFGQL
ITVVRSINRSGGNSYKFKDAKGHIVPVKKPSKELSRILTAFSIQITNPVTILMQETAKTL
LKDATDTKLYTFFMLATQLEDCKKFYSSAIEKKMEAESRLEEKNDYKEKLEKEYRTWKKK
YDFMQSIETRRKDIKGMKAELAWSIVKELENQDKEITLSIDNLNKKVQKYDNLYMEKNEV
YEKLKSKKDKVGEDLKSVRATEEALQEEKYAAKQALQVADTHVKSSSRKMDELKRRLSKN
DKEILELTTMIKKLKAEGVSEFEEKRLGREAIKSALRKEISTAKSIVDTTDNHLHNIEKT
ISRIEDQIREHRHEMSASKSKMETLSKRIKSLQGLKDNKFAVYGSDMVNLCAALEDNYRL
FKHKPIGPLGAFIRFKSGVTKSQKILVDSELRKLCQAFIFDNYEDKTVFEKFARNYNYKG
SKYTLTFRKDIYDVSNKKVNEGNYPSVFDLLEFDDANIANCLIDHRKIEKILILPTESLA
QKMFSQSSPKNCSYGLVYSEERHCACSYYSHPYRSYMSAQLSQQLLIQSNVGEHLVGLEK
ELNAAQLEYNAIQEAHDSLKSGNIKLNYEERSLSKKKINEQQRIITEKSAKLNVINSEEQ
TEEPPMDVVVMEEDLEGFEEMKGRLSDELESESEQFASVKEVCLSAQKNYAEIEEKCSTY
NTESLERKMLNIQSDINQIDKERNRITQKKTEFSEMISTKQEDKDKVSLEIDKHLQKAKK
WSEERIDTIRSKDEIYNKIQAAEQSLKERQERVHESPETITKEYGRLGNLFRSVTTKCIT
LSEKIQRLGETLDIRKLGFVEIRKSVCRRIKMAFSMRLSARNYIGELSFDHKENSLRMSV
NPEGSSVSKQRRGLKTLSGGEKSYSTISLILALWDSMHPPFRIMDEFDVFMDMVNRRVAL
DLIINIATDTRKFQYIFLTPLNIDNVQVNEDVSILKLVKSIS
NT seq
3189 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaggcctgcggaagaggattcccaacaaagggtttccaagagtcttcgaggagag
aaagaagattgggaacgtctccctggaatgattgaaaaggttgttctgaagcaatttatg
tgtcatcaggagtttgtttactctccaacacgtcgtgtaaatttcgtcgcaggacagaat
ggatctgggaagtccgccgttcttacggggattctatttggactgggaggtaaagccaag
gatctggggaagtcatccctaaaggatctcattcgagagggctcaaatggatgttctgtt
gaagtctctctcatgaatcaaggggaaaatggatatcgatatgaggatttcggtcaatta
atcaccgtagttagatccatcaataggtctggagggaattcctataagttcaaggatgca
aaaggtcatatcgttccggttaagaaaccaagtaaagaattgtctcgtatactaacggca
ttttctatacaaataacaaatccagtaactatattaatgcaagaaactgccaagacactc
ttaaaagatgcgacggatacaaagctctatactttttttatgcttgcaactcagctagag
gattgcaaaaagttttacagctctgctattgaaaagaaaatggaagcagagtcacgttta
gaggaaaaaaatgattacaaagaaaagttggaaaaggagtaccgaacctggaagaagaaa
tatgattttatgcagagtattgagacgcgtcgcaaggatattaagggcatgaaagcggaa
ttggcttggtccattgtcaaagaattagagaatcaagataaagaaatcactctctctatt
gataatctgaataagaaagtccaaaaatacgacaacttatacatggaaaaaaatgaggtc
tatgaaaaattaaagagtaagaaagataaagtgggagaggacttgaaatccgttcgtgca
acggaagaagcccttcaagaagagaaatatgctgcaaagcaggctcttcaagtagcagat
actcatgttaagtcatcttcaagaaaaatggatgagttaaagagaaggctcagtaaaaat
gataaggagatattggagttaacaactatgataaagaaattaaaggctgaaggtgtctca
gaatttgaagagaaacgtttgggacgagaagccattaagagtgctctgagaaaggaaatt
tccacagctaagtccatcgtggatacaacagataatcatttacataatattgaaaaaaca
atttcacgcattgaagaccaaattcgagaacatcgacacgaaatgtcagcctctaaatcc
aagatggagactcttagtaaacgaataaagtcacttcaagggctaaaagataataagttt
gctgtgtatggctctgatatggttaacttatgtgctgctcttgaggataattatagactt
tttaagcataaacccattgggcctttaggtgcatttatacggtttaagagcggcgtgact
aaatctcaaaagattcttgtcgattcagaactacgcaaattgtgtcaagcttttattttt
gataattatgaagataagactgtatttgaaaagttcgctaggaattataactataagggc
tccaaatacactctcacgtttagaaaggatatatatgatgtctctaacaaaaaagttaat
gaagggaattatccctccgtttttgacctattggagtttgatgacgcgaatattgctaac
tgtttgattgatcatcgtaaaattgaaaaaatacttattcttcccacagaatctttagct
caaaagatgttttctcaaagttctccaaaaaattgtagttacggtcttgtgtactcggag
gaacgacactgtgcctgttcttattactctcatccttatcgatcctacatgtctgctcaa
ctgagtcagcaactattaattcagtcaaatgtgggagaacacttggtaggtctagagaag
gaattaaatgctgctcagttagagtataatgccattcaagaagctcatgattcgcttaag
agtggaaacattaaattaaattacgaggaacggtcactgagtaagaaaaagattaatgaa
caacagaggataattactgaaaaaagtgctaagctcaacgttattaattctgaggagcag
acggaagagccgcctatggatgtagttgtgatggaagaggatctagaaggatttgaggaa
atgaagggtcgcttaagtgatgagctggagagtgaatcagagcaatttgcttctgtaaaa
gaagtttgtttatccgctcaaaaaaactatgctgaaatcgaagaaaaatgctctacctat
aatactgagtcattagaacgaaaaatgttgaacattcaaagtgatattaatcaaattgac
aaagagaggaatcgaattactcaaaagaagactgaatttagtgaaatgatatctacgaaa
caagaagacaaggacaaagtgtcccttgaaatagataaacatttacaaaaggctaaaaag
tggagtgaggaaaggattgataccattcgctccaaagacgaaatatacaataaaatccag
gccgctgagcagagtttgaaggagcgacaagaacgggtccacgagtcgccagagaccata
acgaaggaatatggacgattgggaaatctttttcgtagtgttacgacaaaatgcatcact
cttagcgagaaaatacagcgactgggagaaaccctggatattcgtaagctagggtttgta
gaaattcgaaaatcagtttgtcgcagaattaaaatggctttctcaatgcgtctctcggct
cgaaattatattggggagctgtcctttgatcacaaggagaattctcttcgaatgagtgtg
aatcctgaaggaagtagtgtatctaaacagagacgtggactcaagactctctctggtggt
gagaaaagctactctacaatttctttgatattagctctttgggactcaatgcatccaccc
tttcggatcatggacgagtttgatgtatttatggacatggttaatcgaagagttgccctg
gatcttattattaatattgctacggatactcggaaatttcagtatattttccttactccc
ttgaatattgataatgttcaggtcaacgaggatgtttccattttaaaactagttaaaagt
atttcttaa
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