Lepeophtheirus salmonis (salmon louse): 121130458
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Entry
121130458 CDS
T08214
Symbol
shn
Name
(RefSeq) LOW QUALITY PROTEIN: uncharacterized protein shn
KO
K09239
human immunodeficiency virus type I enhancer-binding protein
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lsm03000
]
121130458 (shn)
Transcription factors [BR:
lsm03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
121130458 (shn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C2H2
zf-C2H2_4
zf-C2H2_jaz
zf-met
zf-C2H2_8
zf-H2C2_2
DUF6277
zf-C2H2_2
NOA36
Motif
Other DBs
NCBI-GeneID:
121130458
NCBI-ProteinID:
XP_071749893
LinkDB
All DBs
Position
Z:complement(7393349..7404735)
Genome browser
AA seq
1561 aa
AA seq
DB search
MSSSTTTTTTTSPSKRNSVYELDSPPMNNMIPALEPRWEENEGTYRHKKFKKAASSVVLA
SSSSSSTAIITSSISTLSSNYPESEPLLLKHSALSMVNGQSLYSFSPLQPPSASSTSTTP
SPLPLEFEGDKRRKQHLCPYCPTACAKPSVLDKHIRTHTNERPFPCEPCGFAFKTKSNLY
KHRKSRTHILKLETGIDSSGAEIVAELGESVTEEMETVGSVVSSSSNASSNHLIHIQNPH
HRLFQHPINMKTVSSSPSSSMPIVEDRHHRGGGGIPSTGPPYPSQIILVSSNNNSSLLPT
QQSLQHMHHDSNSQLVVQQQPSSQLAPARLSRPNSIPQNILLQAQRVLVPTTTTVKSMSS
SAKQHPPVQIQPTDLSSFKPTGHPQSLQQRIDKVISENQAIVETLDPLWPRRYMRQNSKD
GAEEKSTNLRGSRKYSLSSPTSLTSSNTSSSVIPTTIVVSKSSSAASGGDYSIRYQNYSP
MQPLNLSEPSRKRSFAQSESNNTASTITAKSVKELWLNSCRQPSKTVVNMEQQLEVIAQN
FEVGNAFHPQNPEGSMIKELLLNTRIASSSSNNAASPTTSTTSSSKLNHLCNNFHFQNSS
INFNSKKTETDLKVDIENDGKFLRPSFLPLTPGSFRPKKNVMQIGNGATLASPETPRPRK
SYVLQYQNGTAYTYLGLKSTTRVYYCSIFRPQPMFVPHKPRLSMYSNWRVVSKDSHPSQL
TPSVGLAAYNSSYKNKYVIAKKSEKDSMVMTHSSMWKKKPSDKGSEGSRMSHETPGLQVS
TSFTSNKEEENGGTLRSVEGGYKTTDDDYTYVRGRGRGGYVCNSCGIRCKKPSMLKKYLR
THSNFRPYMCQYCNFAFKTKGNLTKHMKSKAHHKKCVELGISAEDYCQVDETSLAKKGVS
MASSHGTFQAGDSDSDEEDVDDDDKDEDDQFEDAEEEQEAAHSLLSLSHQFTSSPVVTDN
RGLTPSSLRLSVYPFVSSTSASTTISSSQTLPLCPNSISEHISRNTKRAGEFQDENRGVK
FSFDKIYFPPVSSSNTTTVTSSEPHPRLAPSPKAISTTAGLIENVKITSLSNASNILSPV
TQSSTILSYINKTVSAIRKTTAVSNNLESGETPVALQDYLRDQSYHFSAAQICXREQLKN
IPDAQSSTTATVSNSAITVVTSSTVDNSSIQRMYPIATLNSAPGIPRNVVMNVKDIPTSK
ENNGIITPPEIVVPRSSKLPIVTQSMTTEESSTTGSRDIFQTNEDGKSVCGICHKVFNKP
SQLRLHVNIHYFERPFRCDACAVSFRTKGHLQKHKRSVGHYNKVNINATFGAPTTANPRP
FKCSDCKVAFRIHGHLAKHLRSKMHIMKLAPPPAPPPLLSQNKPRRTSQSSQEESMDLDR
NKITILQCSKCKLSFNDMKSLQMHNYMEHQNNIIDRHHNPPPLSNPTMVVIPHIPYHAHS
QNNVPLSPPKRVFEHRPIVTHRIPHAISSSSAAAVAAAAAQAAAASSNVPPRVSSFSNSY
SQRDDKTFDCELCGISIVGSNTFSQHLMSHASPRPYVCPDCDAGFPSTRQLEAHMQLHAK
K
NT seq
4686 nt
NT seq
+upstream
nt +downstream
nt
atgagctcctccactactacgacaacgacaacaagtccgtccaagaggaatagtgtctat
gaattagactcaccacccatgaacaatatgattcctgctctggagccccgatgggaagaa
aatgaagggacttatagacataaaaagtttaaaaaggctgcctcttccgtagtgcttgct
tcaagctcttcttcttcgacagccataattacttcctctatttctacactctcttcaaat
tatcctgagtcagagcctttattattaaaacatagtgcattaagtatggtcaatggccag
tccctatattccttctcaccgctccagccaccttccgcttctagtacaagtacaacaccc
tctccacttcctttagagttcgaaggggacaaacgaagaaaacaacatttgtgcccatac
tgtccaactgcttgtgctaaacccagtgtgcttgacaagcacattcgaactcatacaaat
gaacgtccctttccttgcgaaccttgtggattcgccttcaaaacaaaaagtaatttatac
aaacatcgaaagtcacgtacacatattttaaagttagaaactggaatagatagttctggt
gcggaaattgtggctgagcttggagaaagtgttacagaagaaatggagacagtggggtcc
gttgttagttctagcagcaatgcatcttcgaatcaccttattcatattcaaaatcctcat
catcgtctctttcaacatccaatcaatatgaaaacagtaagttctagtccaagttctagt
atgccaattgtggaggatcggcatcacagaggtgggggaggaattccatctactggacca
ccttatccaagtcaaatcattttagtctcttcaaataacaatagttctcttttgccaact
caacagtctcttcaacatatgcatcatgattccaattctcaattagtggttcagcaacaa
ccctcctcacaattagcacctgccagactatcacgtccaaattctattcctcaaaatatt
ttactgcaggctcagcgagtccttgttccaacaacaaccacagtaaaatccatgtcatca
tcagccaagcaacatcctccagttcaaattcaacctacagatctttcatccttcaaacct
actggacatcctcagagccttcaacagcgaatcgataaagttattagtgagaatcaggct
atcgtggaaacattagaccctctatggcctcggagatatatgaggcaaaacagtaaggat
ggagctgaagaaaaatccactaatcttagagggagtcgtaaatatagcctctcttctcct
acttctctaacgagtagtaatactagtagctcagtgatccctacaaccattgttgtatct
aaatcttcctctgctgctagtggtggagactactctattcgatatcaaaattactcccct
atgcaacccctgaacttatcagaaccatctagaaaaaggtctttcgctcaaagtgaatct
aataatactgcttcaacgataactgctaagtccgtgaaagaactttggcttaatagttgt
agacagccttcaaaaacagttgtgaatatggagcaacagctggaagtgattgctcaaaat
ttcgaagttggaaatgcctttcatccacaaaatccagagggaagtatgatcaaagaacta
ttgcttaatacgcggatcgccagctcctcctcaaacaatgcagcctcccccaccaccagt
accacttcctcctccaagctcaaccacctctgtaacaatttccatttccagaattcctcc
atcaactttaactccaaaaaaacggaaactgatttaaaagtggacatagaaaacgatggg
aagttccttcgccccagtttcttacctttgactccgggaagttttcgacctaaaaagaat
gtgatgcaaatagggaatggagctactttggctagtccagagaccccacgtccaaggaag
tcttatgttttgcaatatcaaaatggaacagcatatacatacttgggattaaagtcgacc
actcgagtatattattgctcgatatttcgacctcagcccatgtttgttccccataagcca
cgattatccatgtactccaattggagagtcgtctccaaggactcccatccaagtcaatta
actccatcagtagggctggctgcctataattcttcatataaaaacaaatatgtaattgca
aaaaaatcggaaaaagactctatggttatgactcattcatctatgtggaaaaagaaacct
tcagataaaggatccgaaggaagcagaatgagtcatgagactcctggtctccaagtatca
acatcctttacgtctaataaagaagaggagaatggtgggacattaaggagtgtagagggt
ggctataaaacaaccgatgatgactatacatacgtccgcggtagaggtcgagggggatat
gtttgtaatagttgtgggatacgctgtaaaaagccatccatgcttaaaaaatatttacga
actcatagcaactttagaccttatatgtgtcaatactgtaattttgcgtttaaaacaaaa
gggaatttgactaaacatatgaagtcaaaagctcatcataaaaaatgtgttgaacttgga
atatctgccgaggattattgccaagtcgatgaaacttctcttgcaaagaaaggcgtttca
atggcaagtagtcatggaacttttcaagctggagactccgactctgatgaggaggatgtc
gacgacgacgacaaagatgaggatgaccaattcgaggacgcagaagaagagcaagaggct
gctcactctttactaagtctaagtcatcaattcacttcttcccctgtggtaacagataat
cgaggcttgacaccatcctcacttcgtctttccgtttatccttttgtgtcctccacatct
gcttccactacaatatcttcatctcagactcttcccctctgccccaactctatttccgag
catatttctcgaaatacaaaaagagcaggggagttccaggatgaaaaccggggtgtcaag
ttttcatttgataaaatctactttccacctgtgtcatcatcaaatactactactgttact
tcttctgagccacatcctcgattagctccttccccaaaagctattagtacaaccgctgga
ctaatagaaaatgttaaaataactagtctgtcaaatgcttccaatattctaagtcccgtt
actcaatcatcaaccatcctttcatacatcaataaaaccgtttctgccattcgtaaaaca
acggcagtaagtaataatcttgaaagtggagaaactccggtggccttgcaagattacctg
agggatcaaagctaccacttcagtgcagcccaaatatgttgacgcgaacaattaaaaaat
atccctgacgctcaatcttccacaactgctactgtctccaattcagctattactgttgtt
acatcctccaccgttgataatagtagtattcaaagaatgtaccctattgcaactctcaat
tctgctcctggaatacctagaaatgttgtgatgaatgtgaaagacattcctacttctaaa
gaaaataacggaataattacacctccagaaattgttgttccccgctcatctaaactacct
atcgttactcaatcaatgacgactgaagaatcatcaacgacgggtagtcgagacatcttt
caaacgaatgaggatggaaaatccgtgtgtggtatctgtcataaagtcttcaacaaacct
tctcagcttcgtttgcacgtcaatatccattattttgagcgtccatttcgatgtgatgct
tgtgcagttagttttcgcacaaaggggcacttacaaaagcacaaacgctctgttggacat
tataacaaagttaatatcaatgccacttttggagctccaactactgcaaaccctaggcct
tttaaatgttcagattgtaaggttgcattcaggatacacggtcatttagcaaaacattta
aggtcaaaaatgcatatcatgaaattggctccgcctcccgctcctcctccattattgtca
caaaacaaaccccgaaggacttctcaatcttctcaagaggaatctatggatttagataga
aacaaaataacaattctgcaatgttcgaagtgtaaattgtcatttaatgacatgaaatcc
ttgcaaatgcataactatatggaacatcaaaacaatatcattgatcgacatcataatccc
ccaccattaagcaatccaactatggtcgttattccacatattccatatcatgcacattcc
cagaataatgtacccctatcacctcccaaaagggttttcgaacatcgacctatagtaact
caccgtataccccatgccatttcatcatcatctgctgcagcagttgctgcagccgccgct
caagctgcagcagcttcatctaatgttccacctcgagtttcttcattcagcaattcatat
tctcaaagagatgataaaacttttgactgtgagctctgtggaatctcaattgttggaagc
aatacattcagtcagcatttaatgtctcacgcatcacctcgtccctacgtttgcccagac
tgtgatgctggcttcccaagtacacgtcagttagaggcacatatgcaattacatgccaaa
aaatag
DBGET
integrated database retrieval system
