Lepeophtheirus salmonis (salmon louse): 121130805
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Entry
121130805 CDS
T08214
Name
(RefSeq) LOW QUALITY PROTEIN: autophagy-related protein 16-1-like
KO
K17890
autophagy-related protein 16-1
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm04136
Autophagy - other
lsm04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
121130805
04136 Autophagy - other
121130805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lsm04131
]
121130805
03029 Mitochondrial biogenesis [BR:
lsm03029
]
121130805
Membrane trafficking [BR:
lsm04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
121130805
Others
Specific organelles associated proteins
Auto phagosome
121130805
Mitochondrial biogenesis [BR:
lsm03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
121130805
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
ATG16
Beta-prop_EML_2
EIF3I
WDR55
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_HPS5
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_IFT140_1st
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
NBCH_WD40
Beta-prop_SPT8
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
Beta-prop_SCAP
Beta-prop_DCAF4
Beta-prop_WDR35_TULP_N
Amidoligase_2
Crescentin
Beta-prop_Vps41
Atg11_middle
Motif
Other DBs
NCBI-GeneID:
121130805
NCBI-ProteinID:
XP_040582414
LinkDB
All DBs
Position
1:complement(44291243..44294511)
Genome browser
AA seq
536 aa
AA seq
DB search
MDWRKSIYQELRRRNRRETGFADLIKRHGGGDLQGGGGGGGGFVGVRDEDSISVKSLEQK
LFRVQEELTELHRKKGDNAQRVIDLSTALQYSQKEIQEKEKSLVENESLVLKLQQEIESL
NEKLDELRDRNQLLNDEYQALHLALNSADHKLIEAQKENDRLLAQVMEFKERDVQLMNRE
NEIFLQKVQLQVQQQLREAAEEKTVHLPNEKNIQTVGQANLSTICATVRLPTKSYLKFIA
HDGEVNCVAWNPHTSDLYTGGSDRKIKYWNIAKGVAENRGQLSGCNGSIMSLDFDTSGSL
ILGASGDFASRIWSVDGCRLRHTLTGHSGKVMSAKFLLDSTKFISGSQDRTIKVWDLQSR
ACISTKFAGSTCNDLVTNETMIISGHFDKKIRFYDCRNIGGSSSFGSDTHQSEIIVGGKI
TSLDLSKNGQYLLASTRENKIEITDLRNMKTTLNCLSGSGFQIGCDWARATFSPDSEYVA
CGTSDGSIFIWKYNSSNPERILKEFDSVVVAVAWQPSGNGLVSCDKNRNVVVWADI
NT seq
1611 nt
NT seq
+upstream
nt +downstream
nt
atggattggcgtaaatccatatatcaagagcttcggcgacgaaatcgtcgagaaacggga
tttgcagacttgattaagcgacatggaggaggagatttgcaaggagggggaggaggaggt
ggcggttttgttggagtgcgtgacgaggattccatttctgtaaagagtttagagcaaaaa
ctcttcagagttcaagaagaactcacagaattgcatcgaaaaaaaggggataacgcacaa
cgagtcatcgatctttccactgctcttcagtactcgcaaaaggagatccaagagaaagaa
aaaagtcttgtagagaatgaatcccttgtcttgaagcttcaacaagagattgaatctcta
aatgaaaagttagatgagcttagagataggaatcaattacttaacgacgagtatcaggct
cttcatctagcacttaactctgcggatcacaagctcatcgaggcccaaaaggaaaatgac
agactcttggctcaagtcatggaattcaaagaaagagacgttcaactcatgaatagagaa
aatgaaatttttcttcaaaaagttcaactacaggttcaacagcagttacgtgaagctgca
gaagaaaaaacggttcacttacccaatgaaaaaaacattcaaactgtcggacaagctaat
ctttccacgatttgtgcgaccgtgcgactgccaacaaagtcttatttaaaatttatcgca
catgatggagaagtcaattgtgttgcttggaatcctcatacctctgatctttataccggt
ggctcagatcgtaaaatcaaatattggaacattgcaaagggtgtagctgagaatcgagga
cagttatcaggttgcaatggttctataatgtctttagattttgatacttctggatcctta
attcttggtgcttctggtgattttgcttctcgaatttggagtgttgatggttgtcgattg
cgacatacattaacaggtcactcgggtaaagtcatgagtgccaaatttctgttagactct
acaaagtttatctctgggagccaagatcgtacaataaaagtatgggacttgcaatcaaga
gcctgtatttccacaaaatttgctggctcaacctgtaacgatttagtcacaaatgaaaca
atgattatatctggtcatttcgataaaaaaattcgtttttatgattgtcgaaatattgga
ggctcttcttcatttggatctgatacacatcaaagcgaaatcattgttggaggcaaaatt
acatcccttgatctttcaaaaaatggtcaatatttactggcatccacacgtgaaaacaaa
attgagataacggatcttcgaaatatgaaaacaactcttaattgtctaagtggctctggt
tttcaaattggttgtgattgggctagagcaaccttcagtcctgattcggaatacgtcgct
tgtggaacttctgatggctcaatatttatatggaagtataattcatccaatcctgagcgt
atattgaaagaatttgattcggttgtggtggcagttgcttggcagccctctgggaatgga
cttgtatcctgtgataagaatagaaatgttgttgtttgggctgatatataa
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