Lepeophtheirus salmonis (salmon louse): 121130837
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Entry
121130837 CDS
T08214
Symbol
roq
Name
(RefSeq) uncharacterized protein roq
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lsm03000
]
121130837 (roq)
04121 Ubiquitin system [BR:
lsm04121
]
121130837 (roq)
Transcription factors [BR:
lsm03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
121130837 (roq)
Ubiquitin system [BR:
lsm04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
121130837 (roq)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-CCCH
zf-RING_5
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_4
zf-RING_2
zf_CCCH_4
zf-CCCH_4
Prok-RING_4
zf-C3HC4_2
Vesi_VP2
FYVE
Torus
ydhR
Motif
Other DBs
NCBI-GeneID:
121130837
NCBI-ProteinID:
XP_040582438
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All DBs
Position
1:44300896..44321514
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AA seq
1137 aa
AA seq
DB search
MPIQAATQWTEYLNCPVCENGFDIKVRQPISLGCGHTICKTCLFNLQRNQCPFDLGVITV
EVERLPINTALMLLIDSSYNNNNNASSSKQTSQSPPFPSELESYRNSSEPQVIALMKIME
SLALFLKPSSSSNSLSRSMQRKLITLINCQLMEDEGRLRAARAARSLGERTVTELILHHQ
NPQQLSANLWAAVRGRGCQFLGPAMQEEVLKLVLLALEDGEALSRKVLVMYVVQRLESQF
PQASKTSIGHVVQLLYRASCFKVTKREGDSSLMQLKEEFRTYDALRREHDMQIVQIATEA
GLRIAPDQWSSLLYGDSLHKSQMQSIMDKLQTPESFSQSVQELVIALQKTGDPGKLTDLR
PSLDFLAGIDPAQDTFLLSFETLSSALVSVNKVLSGLVAFVNLHSNSKRSTINANVSGSG
NASLSGGGNPGGGMMDSRHHHHIRYKTNLCRDLSIHGSCPRGKNCTFAHSLAELEQHRNS
RKNNNKGLIPPDSTSTKSPLTGVVPSIQPSCSNTSNESSTVSKNESGPFRGRPPPNAPVA
QVAPLPRVVKQCRQGTGENSPSNSNNNLNSNNLAAVVLPPASNPPPLHHPHQSSINSGGH
IQFHVLSDAYGNPVPYQHSSSTTPSPVIQLTTPPQHFHPFINGGGRGGGGGDGMELSSTE
DSVSNKQMSTKSSSDSSCITIPIGESGNEELLFKNNVCQLDEEIVSKSIARIATKSLSAL
QSRKEEIIDTLEDLMGKDEASKLSQEFEELSFQNKASQNSSGLEQQINTTNVIIPSSSYD
ADPCLNSVYSMWTTKSIVSIATKNYAEAAAAVAHEQAVHDGLENQCTVNHHEKEEKGGRY
LFQHGVSFGDDDIHPLPDVPLVSRFGPISRRCNTLLKPSNPSQTQASMDDGTVPTDVVTN
AKQMTHQIPSITSPWYYQNGIMSVQPVAVGPNGEFGYIVVADQAQSTPVILQNPLQSVLA
SEPDDIDRYNEEKECLKICGELSSDIFSSSSTSSDSSITHGSSCSISSSSSNDNYHCSKD
TTITFSNCPNTFDPSSNGVNLQIRQDQLSNELFLIENSIRDREREISINHMQELSISHHR
GALDYGSYISQGLISTEEEDSGLCSYVSLPASTTGFASCDSRDKGRTYIREYHHYAS
NT seq
3414 nt
NT seq
+upstream
nt +downstream
nt
atgcctatacaagcagctactcaatggacagagtatctaaattgtccagtttgtgaaaat
ggttttgatataaaggttcgacagcctattagtttaggatgtggacacaccatttgcaaa
acttgtctcttcaatcttcaaagaaatcaatgtcccttcgatttaggtgtcatcaccgtg
gaagtggagcgactccccatcaacacggctctcatgctcctcatcgatagcagttataat
aacaacaataatgcttcttcctcgaaacaaacatctcagagtcctcccttcccttcagag
ctggagtcctatcgtaattcctccgaaccgcaagtcattgccctcatgaaaataatggaa
agcttggctcttttcctcaagccttcctcatcttctaactccctttctcgctctatgcaa
cgaaaactcatcactctcatcaactgtcaactcatggaggacgagggaagacttcgagca
gcacgagcggctcgttctctgggtgaacgcaccgtaacagaactcattcttcatcatcag
aatccacaacaactctcagctaatctctgggctgcagttcgtggacgtggctgtcaattc
cttggacctgccatgcaagaagaagtacttaaactagtcctactggctcttgaggatgga
gaggcactctcaagaaaggttcttgtcatgtacgttgttcagagacttgagtcacagttt
ccgcaagcctctaaaaccagtattggtcatgtggtacaattactctatcgtgcatcttgc
tttaaggtgaccaagagagaaggagactcgtctcttatgcagcttaaagaggagtttcga
acctatgatgccctacgtcgtgagcatgatatgcaaatagttcaaatagcaacagaagcc
ggactcagaattgctcctgatcaatggtcttctctattatatggagatagtctacataag
tctcaaatgcagtccataatggataaacttcaaacaccagaatcattctctcagtctgta
caagagcttgttatagccttacaaaagacgggggatccgggtaaacttacggatctacgt
ccttctctggatttccttgctggaattgatcctgctcaagatacttttctactaagtttt
gaaacattgagctcagctctcgtatccgtaaataaagtgctctctggtctagtggcattt
gtcaatctccatagtaactccaagcgaagtacgataaatgctaatgtttctgggagtgga
aatgcctcattgagtggaggagggaatcccggtggaggaatgatggattctcgtcatcat
catcacattcgatacaaaacaaacttgtgtcgagatttgtcaatccatggatcttgtcca
cgaggaaaaaactgcacatttgcacactctcttgctgaactagaacagcatcggaatagt
cgtaaaaacaataataagggcttaattcctccggactcgacttccaccaaaagtccattg
acaggagtggtcccatcaattcaaccatcatgctctaatacaagtaatgaatcttctaca
gtctctaaaaacgagagtggaccttttcgtggacgaccccctccaaacgctccagtggct
caagtagctccccttccacgagttgttaaacaatgtcgtcaaggaaccggtgaaaattct
ccttcgaacagcaataacaatctaaacagtaacaatttagcagcagttgttcttcctcca
gcatccaatccaccgcctcttcatcatcctcatcagtcatcaattaatagtggtggacac
attcagtttcatgttttaagtgatgcctacggaaatccagttccttatcaacatagtagt
agtacaactccctcacctgtaattcaattaactacgcctccacaacattttcaccctttt
attaatggaggtgggagaggaggaggaggaggcgatggaatggaattatcatcaactgag
gattctgtttcaaataaacaaatgtcgactaagtcgtcatcagattcatcctgtataacc
atacccattggtgaaagtggaaatgaggaacttttgtttaaaaataatgtttgtcaactt
gatgaagagattgtttccaagtcaattgcgagaatcgcaaccaaaagtttgagtgctctg
cagtccagaaaggaagaaatcattgacacccttgaggatttgatgggcaaggatgaggcc
tctaagttgtcacaagaatttgaggagctttcctttcaaaacaaagcctctcaaaattct
tcaggacttgagcaacaaattaacacaactaatgtaattatcccttcatcctcatatgat
gcggatccatgtctcaattctgtttactcaatgtggacaacaaagtctatagtttctatt
gctacaaaaaattatgctgaagctgcagctgcggtcgcacacgagcaggctgtgcatgat
ggtcttgagaatcaatgcacagttaatcatcatgagaaagaggaaaaaggagggcgttat
ttgttccaacatggagtcagttttggggatgatgatattcatccccttccagatgttccc
ctcgtaagtcgttttggtcccatatctcgccgatgtaataccctcctcaaaccctcaaat
ccttctcaaactcaagcatcaatggatgatggaactgttccaaccgacgttgtaactaat
gcaaagcaaatgactcatcagataccatctattacatcgccctggtattatcagaatgga
attatgtcagttcaaccagttgccgttgggccaaatggagaatttggatatatagttgtc
gcagatcaagctcaatctactcctgttatacttcaaaatcctcttcagtccgttttggcc
tccgaacccgatgatattgacagatacaatgaggaaaaagagtgtctcaaaatttgtgga
gaactatcctctgacattttctcatcgtcatctacgtcctcagattcttcaattactcat
ggtagcagttgtagtatcagcagtagtagtagtaatgataattaccattgctctaaagac
accaccataactttttcaaactgtccaaatacctttgatcccagctcaaatggtgtaaac
ctgcaaattcgtcaggatcagttgtcaaatgaattatttctgattgaaaacagtattcga
gatcgtgagagggaaatctcaattaatcatatgcaagaactctctatttctcatcataga
ggggccttagactatggctcatatatttctcaaggtctaatatcaaccgaggaggaggat
tctggactttgcagttatgtttctctaccggcatcaaccacgggatttgcttcctgtgat
tctagggataagggtcgcacatatattcgagaataccatcactacgcttcatag
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