Lepeophtheirus salmonis (salmon louse): 121131741
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Entry
121131741 CDS
T08214
Symbol
Mat1
Name
(RefSeq) CDK-activating kinase assembly factor MAT1
KO
K10842
CDK-activating kinase assembly factor MAT1
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm03022
Basal transcription factors
lsm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
121131741 (Mat1)
09124 Replication and repair
03420 Nucleotide excision repair
121131741 (Mat1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsm03021
]
121131741 (Mat1)
03400 DNA repair and recombination proteins [BR:
lsm03400
]
121131741 (Mat1)
Transcription machinery [BR:
lsm03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
121131741 (Mat1)
DNA repair and recombination proteins [BR:
lsm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
121131741 (Mat1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MAT1
zf-C3HC4_5
zf-RING_5
zf-C3HC4
zf-RING_UBOX
zf-RING_4
zf-UDP
TRAF3_RING
zf-RING_2
zf-C3HC4_2
zf-P11
RING_XB3-XBAT31
Motif
Other DBs
NCBI-GeneID:
121131741
NCBI-ProteinID:
XP_040583035
LinkDB
All DBs
Position
1:44901716..44904461
Genome browser
AA seq
299 aa
AA seq
DB search
MDDQVCPKCKTTRYRNPSMKLMVNDCGHNLCDSCVELLFVKGSGSCPECQIPLRKVNFRV
QLFDDALVDREVDIRRRILRDYNKKRDDFDSLRSYNDYLESIEDIIFNLCNDIDILDTNK
RINDYKEKNRDSIVRNRHKLSQESMEIQDILHFEEQHSVSKKKEIQEHEASTKLEKQRVK
EQMIQELMFSETDANDIVDSFNSAKSKFSTGIDIKSRTINSSGPLLLPELVPDEPYVYSE
PDIVFDGPSPPRSDKEIKDFCRHIRAAGVSELAAGYVESIACFRALQEAMSGLYYSPCE
NT seq
900 nt
NT seq
+upstream
nt +downstream
nt
atggatgaccaagtgtgcccgaaatgcaaaacaacgcgttatcgcaatcccagcatgaag
ttgatggtcaatgattgcggccataacttgtgcgactcttgtgttgagcttttgtttgtc
aaaggctctggctcctgcccagaatgtcaaatccccttgcggaaggtcaattttcgagtt
caattgtttgatgacgccttagtggatagagaagtggatatcagaagacgtattttacga
gattataacaaaaagcgggatgactttgattcccttcgcagctacaatgattatctcgaa
tccatagaggatattatatttaatctttgcaatgatattgacattctggatacgaataag
cgaatcaatgactataaggagaaaaacagggatagcattgtgagaaatcgccataaacta
tcacaagagtctatggaaattcaggatattctgcattttgaggaacagcactcagtgtcc
aagaaaaaggaaattcaggaacatgaggcctcaaccaaattagaaaagcagagagtcaaa
gagcaaatgatacaggagctcatgttctctgagacggatgcaaatgatattgtggattct
tttaatagtgccaagtccaagttttctacaggcattgatattaaatcacgaacaatcaac
agctcaggacctcttctccttccagagcttgtacctgatgagccctatgtttactcagaa
ccagatattgtatttgatggaccctctccgcccaggagcgataaggaaataaaagatttt
tgtagacatattcgagctgctggagtatctgagcttgctgcaggttatgtagaaagtata
gcttgctttagggctttgcaggaagcaatgtctggcctctactactccccatgtgaataa
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