KEGG   Lepeophtheirus salmonis (salmon louse): 121131833
Entry
121131833         CDS       T08214                                 
Symbol
Smu1
Name
(RefSeq) WD40 repeat-containing protein SMU1
  KO
K13111  WD40 repeat-containing protein SMU1
Organism
lsm  Lepeophtheirus salmonis (salmon louse)
Brite
KEGG Orthology (KO) [BR:lsm00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:lsm03041]
    121131833 (Smu1)
Spliceosome [BR:lsm03041]
 Complex B
  Other components
   Complex B specific factors
    121131833 (Smu1)
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_WDR3_2nd Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_2nd WDR55 Beta-prop_WDR36-Utp21_1st EIF3I Beta-prop_CAF1B_HIR1 ANAPC4_WD40 Beta-prop_EML LisH_TPL WD40_MABP1-WDR62_2nd WD40_Gbeta Beta-prop_WDR90_POC16_2nd Beta-prop_ACSF4 WDR90_beta-prop_4th NBCH_WD40 Beta-prop_WDR75_1st Beta-prop_RIG_2nd Beta-prop_VPS8 Beta-prop_TEP1_C Beta-prop_Nup120_160 WD40_MABP1-WDR62_1st Beta-prop_DCAF4 Beta-prop_WDR41 Beta-prop_Aladin WD40_RFWD3 Beta-prop_IFT140_1st Beta-prop_NWD2_C Beta-prop_SCAP Beta-prop_Vps41 Ge1_WD40 Beta-prop_HPS5 Beta-prop_SPT8 Beta-prop_IFT122_1st Beta-prop_WDR35_TULP_N Beta-prop_NUP159_NUP214 Beta-prop_WDR19_1st PROPPIN Beta-prop_IP5PC_F RMC1_N WD_LRWD1 Beta-prop_BBS7 LisH_PAC1 VPS8_N BBS2_Mid LisH_WDR26 Beta-prop_EIPR1 Beta-prop_CGLA GerA LisH_2
Other DBs
NCBI-GeneID: 121131833
NCBI-ProteinID: XP_040583165
LinkDB
Position
1:47435163..47445184
AA seq 512 aa
MSIEIESADVVRLIQQYLKENNLHRTLATLQEETSISLNTVDSQEGFVSDINNGHWDTVL
KAIQTLKLPDKKLIDLYEQVVIELIELRELGAARSLLRQTDPMIVMKQNDPDRYVHLENL
LARSYFDPREAYPDGSTKERRRAAIAQSLSGEVSVVPPSRLLALLGQALKWQQHQGLLPP
GTQIDLFRGKAAMREQEEEKFPTMMSKQIKFGSKSHVEAGIFSPDGQYLVTGSVDGFIEV
WNFTTGKIRKDLKYQAQDNFMMMEEAVLSLSFSRDSEMLASGSEMGHVRVWKISSGQCLR
RFEKAHSKGITSLQFSKDNSQILSASFDHTIRIHGLKSGKTLKEFRGHTSYVNCSIFTID
GHNVVSASSDGTIKVWNAKTTECINTFKSLGGSAPDVSVNSVHLISKNNDNFVVCNRTNT
VAIMNTQGQIIRSFTSGKREGGSFVACYVSPRGDWIYGVGEDFILYCFSSSSGKLERTLN
VHEKDVIGICHHPHQNLICTYSEDGLLRLWKP
NT seq 1539 nt   +upstreamnt  +downstreamnt
atgtccattgaaattgagtcagcagatgttgtccgtctcattcaacaatatctcaaagaa
aataatcttcatcgaaccctagctactcttcaggaagaaacttcaatctcactaaacact
gtggattcgcaagaaggatttgtttccgatataaacaatggtcattgggacacagtactt
aaagccatacagacacttaaattgccagacaaaaaacttattgatttatatgaacaagtt
gtcatagagttaatagagcttagagaactcggagcagctaggtctttacttcgtcaaact
gatcccatgatagtaatgaaacaaaatgaccctgacagatatgttcatttagaaaatctc
cttgcgagatcatactttgatccacgtgaggcatatccagatggtagtacgaaagaaaga
agaagagccgcaattgctcagtcattatccggcgaggtctcagtggttccaccatcaaga
ttacttgcacttcttggacaagctctgaaatggcaacaacatcagggacttcttcctccg
ggtacccaaattgatttattcagaggaaaggctgctatgagggaacaggaagaggaaaag
tttccaactatgatgagcaaacagatcaaatttggctcaaaatctcatgttgaagcggga
attttttcacctgatgggcagtatttagttactggctcagtagatggttttattgaagta
tggaattttaccacagggaaaattcgtaaagatcttaagtatcaagcgcaagataacttt
atgatgatggaagaggctgttctctctctatcattttcacgtgactctgaaatgttggca
tctggttcggaaatggggcatgttcgcgtatggaaaatttcaagtggtcaatgtttacga
cgatttgaaaaagctcactccaaaggaattacatcccttcagttttcaaaagacaattct
caaatccttagtgcttcctttgatcatactatacgcattcacggtctaaaatccggaaag
actctgaaggagttccgtggacatacgtcctatgtaaattgttcaatttttactattgac
ggtcataatgttgttagtgcatcatcggatggaactattaaggtgtggaacgcaaaaacg
acagaatgcatcaatacttttaagtcattgggtggatcggctccagatgttagcgtgaac
tctgtgcatttgatctccaaaaataatgataactttgttgtgtgtaatcgaacaaatact
gtggctattatgaatacacaagggcagattatccgttcgtttacatctggaaaaagggaa
ggaggtagttttgttgcttgttatgtctctcctaggggagattggatctacggcgtggga
gaagattttattctttattgtttttcaagctcttctgggaaattggaaagaacattgaat
gttcatgaaaaagacgtcatcgggatatgtcatcatccccatcaaaatctgatttgtaca
tatagtgaagatggattattgaggctatggaagccgtga

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