Lepeophtheirus salmonis (salmon louse): 121131986
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Entry
121131986 CDS
T08214
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm03030
DNA replication
lsm03420
Nucleotide excision repair
lsm03430
Mismatch repair
lsm03440
Homologous recombination
lsm03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
121131986
03420 Nucleotide excision repair
121131986
03430 Mismatch repair
121131986
03440 Homologous recombination
121131986
03460 Fanconi anemia pathway
121131986
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lsm03000
]
121131986
03032 DNA replication proteins [BR:
lsm03032
]
121131986
03400 DNA repair and recombination proteins [BR:
lsm03400
]
121131986
Transcription factors [BR:
lsm03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
121131986
DNA replication proteins [BR:
lsm03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
121131986
DNA repair and recombination proteins [BR:
lsm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
121131986
MMR (mismatch excision repair)
121131986
DSBR (double strand breaks repair)
HR (homologous recombination)
121131986
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
CDC24_OB3
OB_MEIOB_N
DUF223
Motif
Other DBs
NCBI-GeneID:
121131986
NCBI-ProteinID:
XP_040583341
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All DBs
Position
1:complement(51102538..51105691)
Genome browser
AA seq
631 aa
AA seq
DB search
MPVKLTGGALLSICQGDRVENPVLQILGNKKINGSSSDRYRLLISDGDYSNSFAMLATQM
NDKIHNGQLENYTVVSVKKYVCNNMQGKKVIILLDIDISTPGAEIGEKLGNPRAINPDGT
VNEKPSSSGGNSSSSNQKRYGDDAGLNAPPSKKTPLAPQNPPRSSILDPRPVIGSSSTPS
TNIMPINSLTPYQNKWTIQGRVTNKSDIRRWSNSRGEGHLFSFDVLDASGSIKIAAFKEL
CDKFFNLIEIGKVYYISQGVLKAANKQFNNTNNDYEITLKDTSEVSLCTDADKDVPTISF
DFVKIADLAKCAKDSIVDIIGIVKVCNESVQFTSQRTQKEMRKRDLTFVDTSLTEVNVTV
WGTMADTFEGSNFPVVAIKGAKVSDYNGVSLSTLISSTVQMNPDIPQAHKLKGWFESEGS
NIETTSLTQSQLGRSNNMDSGSEGKTIGEVKYDNLGSSTEKPDYYSTQALISMFQKDKAL
YQACNRVSEGRACNKKVVDNNGSYRCEKCNVDNDEFNWRIILNLLIVDSTDSQWVNCFQE
SAESILGVSAQDLGHSFQHDEEKYNQIFKEANFKTYNFRIRCKADNYNGESKSRHTIMSL
SPVNYEENNNKLIQELKQEGVDISSIENSMA
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtgaaattaacgggaggagcgttgttgtcgatatgtcaaggggatcgagttgag
aatcctgtgttgcagattttggggaataaaaaaatcaacggctcatcttcggatcgctat
cgcctgttgatctcggatggtgactattccaactcctttgccatgttggccacccagatg
aacgacaagatccacaatggacaactggagaactacaccgtcgtctccgtcaagaaatac
gtttgcaacaacatgcaagggaaaaaggtcatcatccttctggacatcgatatctccact
ccaggggcggaaattggagaaaaactaggaaatcccagagccattaatcctgatggaacc
gtcaacgaaaaaccatcctcctctggtggaaacagctcctcctccaaccaaaagcgttac
ggagatgatgccggactcaatgcgccaccttccaaaaaaacacctcttgccccacaaaac
cctcctcgctccagcattctagaccccaggcccgtcattggatcatcatccactccctcc
accaacatcatgcccattaactctctcactccctaccaaaacaaatggacgattcaagga
agagtcacgaataagtcggatatccgacgttggagtaattcacgaggggaaggacatctc
ttttcctttgacgttttagacgcatctggctccatcaaaattgctgcattcaaagagcta
tgcgacaaattcttcaatctcattgaaattggaaaggtctattatataagtcaaggagta
cttaaagccgcaaataagcagttcaataacacgaataatgactatgaaatcactcttaaa
gacacgtcggaagtatctctctgtactgatgctgacaaagacgttcccaccatttctttt
gactttgttaaaattgcggacttggcaaaatgtgccaaggatagtatcgtggatattatt
ggtattgtaaaagtgtgtaatgagtcagtacagtttacgagtcaacgtacacaaaaggaa
atgcggaagcgggatttgacttttgtggatacaagtcttacggaagtcaatgtaaccgta
tggggaacgatggctgacacatttgagggaagcaatttccctgtggtagctattaaagga
gccaaagtctcggactacaatggagtatctctaagcactttgatttcttctacagttcag
atgaaccccgatatccctcaggcacataagttaaaaggatggtttgaatctgaaggctct
aatatagagacgacgagtttgactcagtcccaattgggacgctccaataacatggattcc
ggatcagaaggtaaaacaataggagaagttaaatatgacaatctcggttcatccacggag
aagcctgactattactctacccaggctctcatttccatgtttcaaaaggataaggcactc
tatcaggcctgtaatcgtgtgtctgagggaagggcctgcaataaaaaagtcgtggacaac
aatggctcatatcgatgtgagaagtgcaatgtggataacgatgaattcaattggcgcatc
attctcaatttgctcattgttgattccacagattctcaatgggtcaattgttttcaagag
tctgctgaaagtattttaggtgtatctgctcaagatcttggacactcctttcaacatgat
gaagagaaatacaatcaaatattcaaagaagctaatttcaaaacatataactttagaatt
cgttgcaaggctgataactataatggggagtccaagtctcggcacaccatcatgtccctc
tcacccgtcaattatgaagaaaacaataataagttaattcaggagctgaaacaagagggg
gttgatatctcctctatcgaaaattccatggcttaa
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