Lepeophtheirus salmonis (salmon louse): 121132192
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Entry
121132192 CDS
T08214
Name
(RefSeq) location of vulva defective 1
KO
K04988
polycystin 1L2
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
lsm04040
]
121132192
04091 Lectins [BR:
lsm04091
]
121132192
Ion channels [BR:
lsm04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
121132192
Lectins [BR:
lsm04091
]
C-Type lectins
Others
121132192
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Polycystin_dom
PKD_channel
PepSY_TM
Motif
Other DBs
NCBI-GeneID:
121132192
NCBI-ProteinID:
XP_040583519
LinkDB
All DBs
Position
2:complement(24389204..24440771)
Genome browser
AA seq
1525 aa
AA seq
DB search
MEARETTVDILESISGALKKTNVKNPSDLKAIIDNTAGTAVTLLNSLKEILYNNDPDDIP
ISDKINAEYMPYDTDIPEDDADIPDDPEDAFKQNALKLTRIHSIEQVKKIASIVDDVGLS
LVSKLIPGESLKSSLSTGFQMIISKFDASNLIGEDTDGDGIPDMKLRFEFDNNPSVVQFP
LGFCPNTNIPGMISYECTGVYSIVTKCWDTITMIYPISAQRLHPGTKQIDVKVYDGYDHE
VIIDNLSRDIEFLIHKDISGDLSEDFVHVDVSSKLESYDNKPPIMYHQFNISHPYSTLNL
EIKAGNINDNSSIIILFGYNFLPTVKKCDFLKSMRDVRRNENGTKTLFINDELIKNQTGT
WYLGVSTISNTIILKEGKTCSDFTLANSQLDSDFKSMNYSLRVYSGGCYYFNKVTEIWEG
LGLKNLNLSRKESGCLSSHLSSFASGSFYLMNNIDFHLIFPLSSFSDNLTFFTFLALTFI
AYLLALIYSIIMDRIDIKKMNVQFMADNHQNDTYMYEIVVETGPFLSSQVKCNIQFILFG
ENDITEIRKLNDETRDLFRSGSFDSFLLSTNRPLGPLLRLLIWTDSMGFGDAGSWYLMSL
TVLDIQNGVKTKFIGNTWLALDRGDFEETAVLYPQSYEEPEDYKYLIRTSLLRLIKNHHL
WLSIFIKPFKSRFTRVQRSTVCLTYYSLSMILNAFYYSLTPGHLIDSLFAIEFIGFDYRD
ILTGFVSSIIVTIPTILPVVMFTKSRNRKMRESRLNEGINIAINKKTLDIKVEGHQRKKN
AIEKRRNRSYHYIFGIISWIFCFMIICTSITATIGIVVHFTNVVIYQFIVAMLVNWFTSF
FIVQPIIITFLIFYHGFYKQSTNHFEDDHTEEDEEPPKIYFDINDNESIDRRPRNETPNR
IHLDMDFKQRLKELRSSEFEMRQVIKELLTYFCYLSIVLIICFGPRDPNAHWEKKNIVVN
VIHGGAMCEIYPNDDSRYRPCIETRASTDFQKIRDINDWWKWVETTLIPNTRVQPWYNDR
PPYGFRGYLNDRVNRLIGYAIVRQIRQKIGVCRTHPFVREHIKDCLGEGSISSEDTTSWC
ENWKAKFLEPNCTEAPEYQYLSATELESLTVSGKINTYSGGGYVLRLQGYIGDLQKRIKK
LQQDNWTDNRTRGLLAEFSVYNAQINMFATVTCIGEFVGGGIQPYHRVEVFKLFPDNSFF
SEIISISEVLFVLATLYYTISTLTTLKKEGLGKFIKNFWNLTNFATILFSYTAIALFIVR
LIIVRETTKRISMTRGNEYIRLTIPALINTYYEYSISFIAFTTSLKLCKLLGFQKTFRQI
GLTIKLCFVGLSTFFIEFCILFGAFCSFFYFVLRNDLEKFRDFLRSFENTLAMSIGKFNF
SELRDANLLAAWIFFAFSIAINMVLINMVMSIINLAFEEVKESKSISKNKFHLLQYAKNM
TAQMIGIQNPKLIEPVYDIQESNKVIRENHLSKKASILMDYLETEYSSINIEERKFLQKF
KEKAKDGNEKRIGFDTFFNPDNSLN
NT seq
4578 nt
NT seq
+upstream
nt +downstream
nt
atggaggcaagagaaactacagtcgatattttggagtctatttctggtgcattgaaaaaa
acaaatgtgaaaaaccctagtgatttaaaggcaattattgacaacactgccggaacagcc
gttacactgctaaatagtctgaaagaaattttgtacaacaatgatcctgatgatattccc
atatctgacaagattaacgcagagtatatgccctatgatacagatattcctgaagacgac
gcagatataccagacgatcctgaagatgcctttaagcaaaatgctttaaagttaacaaga
atacactccattgaacaagttaaaaaaatagcctcaattgtagacgatgttggacttagt
cttgtgtctaaattaataccaggagaaagtttaaagtcatcattatcgactggattccaa
atgattatttcaaaatttgatgcgtctaatttgattggagaggatacagatggtgatggc
attccagatatgaaattaaggtttgaattcgataacaatccatcggttgtacagtttcct
cttggcttttgtccaaatacaaatataccaggcatgattagctatgaatgtactggtgtc
tactctatagtaaccaagtgttgggatacaataactatgatatatcctatctcagctcaa
cgacttcatccaggaacaaaacaaattgatgttaaagtctatgatgggtatgaccatgaa
gtaatcatcgataatctatcccgagacatcgaatttcttattcataaagacattagtggc
gatttgagtgaggattttgttcatgtagatgtatcctcaaaactagagagttatgataat
aaaccacccattatgtaccatcaattcaatatatctcatccttattccacgttgaatcta
gaaatcaaagcaggcaatataaacgataatagttctattattatattatttggatataat
tttttacctactgtgaagaaatgtgattttcttaaaagcatgagagatgtacgaagaaat
gaaaatggtacaaagactttatttataaatgatgaattgattaaaaaccaaactggtaca
tggtatttaggagtgagtacaatatcaaatactatcattttaaaagaagggaaaacctgc
agtgactttacgttagccaactcacaattagactctgactttaaaagcatgaattactca
cttcgagtatatagtggaggctgttactattttaacaaagtaactgaaatttgggaagga
cttggactcaaaaatctcaatttatcaaggaaagaatctggttgtctttcatcgcatctg
agttcctttgcctctggatcattttatttaatgaacaatatagactttcatctgatattt
cccttgtcatccttctcggataatctaacattttttacctttcttgctctaacttttata
gcttatttgttggctctaatatactcaattataatggacagaattgacataaaaaagatg
aatgtacaattcatggcagataatcaccaaaatgacacatatatgtatgaaatagttgtt
gaaacaggcccctttctcagcagtcaagttaaatgtaacatacagttcatattatttgga
gaaaatgacatcactgaaataagaaaactgaacgatgagacacgagatctattcagaagt
ggatcctttgattcttttcttctatcaacaaatcgaccattaggaccacttttaagactc
ttaatttggacggacagtatgggctttggtgatgctggatcttggtatttaatgagttta
accgttcttgatatacaaaatggtgtaaaaacaaaatttattggaaatacatggcttgct
cttgatagaggagactttgaagaaacggctgttctatatcctcagtcatatgaagaacct
gaagattacaaatatttgattcgtacatctttattgagattgattaaaaatcatcattta
tggctctctatttttatcaaaccatttaagtcccgcttcacaagagttcaacgatctact
gtgtgcctcacttattattcactaagtatgatactcaacgccttttattactcgttgact
cctggacatttaattgattctttatttgcaatagaatttataggattcgattatagagac
atacttactggttttgtatcgagtataattgtaactattcccactattttacctgttgta
atgttcacaaaatcaaggaatcggaaaatgagagaaagtcgcttaaatgaaggaataaac
atagccataaataaaaaaaccttggacattaaagtggaaggccaccaaagaaagaaaaat
gctattgagaaacggagaaatcgttcttatcattatatatttgggattatatcatggata
ttttgttttatgatcatttgtacttcaattactgctaccattggaattgtggtacatttt
acaaatgttgtcatctaccaatttattgtcgcaatgcttgtaaattggtttacttcgttt
ttcatcgtacaaccaatcattatcacatttttgatattttaccacggattctacaaacaa
tcaacaaatcattttgaggatgatcatactgaagaagacgaggaacctccaaaaatttat
tttgacattaatgataatgaatcaatcgatcgtagacctagaaatgaaacacctaatcga
atacatcttgatatggattttaaacaaagactaaaggaattacgaagtagtgaattcgaa
atgcgtcaagttataaaagaactgcttacatatttttgttacttatccattgttctgatt
atttgtttcgggccaagagatccaaatgctcattgggaaaaaaagaatatagttgttaat
gtaattcatggaggagctatgtgcgaaatttatccaaacgacgattcacgttatagacca
tgtatagaaactcgagcctctaccgactttcaaaaaataagagatattaatgattggtgg
aagtgggtagaaacgacactgattccaaatacaagagttcagccatggtacaacgatcgg
ccaccgtatggattcagaggctatttaaatgatcgtgtgaatcgtttgataggatatgcg
attgtaagacaaatccggcaaaaaattggagtttgtagaactcacccatttgttcgtgaa
catataaaagattgtcttggcgagggatctatatcatcagaggatacaacttcttggtgt
gaaaattggaaagcgaaattcttggaacccaattgcacagaggctccagaatatcaatat
ctctctgcaaccgaactagaatctttaactgttagtggtaaaataaatacctatagtgga
ggaggatatgttttaagactacagggatatataggggatttacaaaaacgaataaagaaa
cttcaacaggataactggactgataaccgaactcgtggtttacttgcagagttttcagtt
tacaatgcacaaattaatatgtttgcaacagtaacctgcataggtgaatttgttggcgga
ggaattcagccatatcatagggtggaggttttcaaactttttccagacaatagcttcttt
agtgaaattataagtatttcagaagtattattcgttttggcaacactttattatactata
agtactcttactacattgaaaaaagaaggacttggaaaatttattaaaaacttttggaac
ttgacaaactttgcgaccatattattctcatatacagcaattgcgttatttattgttcga
ctcataattgttcgtgagactacaaaacggatctcaatgacaagaggaaatgagtatatt
cgtcttacaatacctgctcttatcaatacatattatgaatactcaatttccttcattgct
tttacaacatcacttaaactatgcaaattattggggtttcaaaaaactttcaggcaaata
ggtttaactatcaaattgtgctttgtgggactctcaacatttttcattgaattttgtatc
ctttttggagcattctgttcattcttttactttgtactaaggaatgatctggaaaagttt
agggatttcttaagatcttttgaaaatacattagctatgagtattgggaaatttaatttt
tctgagctacgggatgcaaatctattggctgcgtggatattctttgccttctctattgcg
ataaatatggttctaatcaatatggttatgtctattattaatttggcatttgaagaggta
aaagagagcaaatctatttcgaaaaataaatttcatctcttacaatatgccaaaaatatg
actgcacaaatgataggcatccaaaatccaaagttgattgaaccagtgtatgatatccaa
gaatctaacaaagttataagagaaaatcatttatcaaaaaaagcaagtatattaatggat
tatctagaaacagaatactcttcaataaatattgaagaaaggaagttcttgcaaaaattt
aaggagaaagctaaggatggaaatgaaaaaagaattgggtttgacacattttttaaccct
gataacagtctaaactga
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