Lepeophtheirus salmonis (salmon louse): 121132517
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Entry
121132517 CDS
T08214
Symbol
nonC
Name
(RefSeq) serine/threonine-protein kinase SMG1
KO
K08873
serine/threonine-protein kinase SMG1 [EC:
2.7.11.1
]
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121132517 (nonC)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
lsm01001
]
121132517 (nonC)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsm03019
]
121132517 (nonC)
Enzymes [BR:
lsm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
121132517 (nonC)
Protein kinases [BR:
lsm01001
]
Serine/threonine kinases: Other
PIKK family [OT]
121132517 (nonC)
Messenger RNA biogenesis [BR:
lsm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
121132517 (nonC)
mRNA cycle factors
Common to processing body (P body) and stress granule
121132517 (nonC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PI3_PI4_kinase
SMG1
FATC
FRB_dom
HEAT_ATR
DCB
Motif
Other DBs
NCBI-GeneID:
121132517
NCBI-ProteinID:
XP_040583872
LinkDB
All DBs
Position
1:1042586..1053853
Genome browser
AA seq
3003 aa
AA seq
DB search
MNRSGYYSGKKMEVEIPRITSRNFKSYYPQEFLENYLGDQRIATLQLRLSHESLVDVCLV
YACQITCSIMYHSNKTYVRQNYHSIMDKMAMIFQSNKSEDVKRETVTGLVRIGEIVRLNS
SHNAENFYKFLINGMSNSTSGTYYILALNETLKVRNMDEKQLNGMIEDIKVELEKTESSS
KTVDLVELLRTVSIYETKVFVYNFVDIIDILVGCLIDHNKSTLLSYTITKTFIQWSSYWD
MNLAFSISLLQSFTEDLEELTEDIVNAQSEQSSQKYMKNIINLLQIFNTILSCIHVINGV
VCSNLDAWIDIIYKCLESTLSKYFNETLLICGQRTFLILLKEEGTFKAKYETQIFRLIQA
FTLHNFDGLTFRGKDFSLKFIGKVFKYSNSSQQATIVKSVLNVESLVHVIFSLDKQLKMS
FINFFSILLNSKSVLLIQDIYSYLVNFLHQSLNDSNPKYSYRQGNTLILHILGSFCNLIS
SNGSVISKWALDPPIFTVLCAENKVADPSFIMREPMRHLILLRALHAHCHLKDNFIRTSC
INAVLVAPSFSSTFYGKILEILRKLFDYNYGTRYLYLRISTWIERTFNTHPEVYTTNSTL
FSSLIDSVLRFVYNHHNPKIIRKCLKPLISLINSNACTQEQIDYAYKIICIHISNKDEQI
RELCHVLHSKIIPSTTCSNSIELHKDKLIKNLFLSRFMGQVNHIDFRHLIQHLFKTVNDD
NKSFNNNRVLRRNFTDSNKGKDTFIKESALYNEELYNFWNACEISWFAIANKLKTPLGKA
QDLLTTIEKQIRLQVQSPNVSLSHSLLGFFDIFERMLINSCRGGSAFHCKIPSKTASSFF
SANEKTCTDWIKRLRPSLVALASKVNAYDFVIRQCNEALSLEYSSDNISDQENMLIHFSI
ALFKKGLSYDLKGLYSWCKKNTKIDGRWILALTDLTNYKIESLTKLLKNHKNIDPMIQQV
IHDEVSFGQYQNQIKNYYSQTEGTYVGSQESWESLCQSFDKYTLTPQEDPLALTKSNSEP
RLLIVQAHNKLIEAARIYMEHSHFDIDYCNKLSDVKTSIKKLCQMNLHSRFDCEMLILLK
LVLREFNPGSDFELSFLHDIYKWEDSLSLKILVALKDWADLFIRRNGRYPPNIIEKAESL
TFKIVNRSRDAQNFPLALEYLDSLLGNGSHDVLEYARCFNFSESFISIKQVRCFQEVAIL
ADSLDKKELSCNLLTGTIMNILKSQSNENFEVSKLVADLMHDLAIFKKISLKDGETVSGQ
YSISDILILGNHFISSSVCELIPYNSVNPNCMEIGFLLKNSVSLSPDVAKYWGSFADWAF
ELGEQILQNEVTSSIKDSEKEALNNFDLAQDVFDKICSLFSNPKLQTKLAKDMTKLEFME
DQVKELCGDDISNLQNILEIWLTIQKRMYFYFELSLFSYFQQISLSTCEDKVIPATLRIL
HMIVKYSLELEEPLEKGLSVTPCRQWIPIIPQLFSRLNHPIKLVRNKLIELLSRLAKENA
QSIIYPAIVGSLTKGKLSNIVDLQEDEDGSPKKNENSDKSMQSAYIQIVNNVRAECSMYE
VDEIVALVFELQRISLLWDELWSATLQQYSNDINQRAKKLEKEIVKLRQNDALQGKEIKR
LIFEKFNIIFKPLLFVLEKIVKITSVPETQNEINFSKKYQEHINNLIDSLRNPTDPFTPV
NLLKQLQGKLSNKLYRHHCLSLRELSSVLANFKNVKIPMPGVVSHKNVTINSFHRILTTL
ATKTKPKKLWILGSDGKRYGYLLKGLEDLHLDERIMQFLTITNDMTNHNGYKARTYAVVP
LGIRSGLIQWVKKAIPVFSLYKKWQQKKLNSNDEKQKNNLQNPSDLYYSKLFPLLREKGI
NNLDSRKKWPDSVLRDVMESLISETPNDLIASEIYFASYSSKDWYHKINNLTKSIAIMST
IGYIIGLGDRHLDNLLIDFAAGEIIHIDYNVCFEKGKNLIIPERVPCRLTQNIVKIFGVP
GVQGAFKYSCEDVLKSLRGGCDTLINLLEAFVYDPLVDWTPGVDTLLAQNVNDLKHKKDL
QTEIMFSMYCVRITEIESAWFDNKYSFIDYLSKMENSLDQWLETDGNQKTLNQDLSDMHV
CMSLLKDAESNPRHKLFFSKSNYKEFRDSKQFEALVVEKIENMLADIENQYNLIKRTYSV
MCPSQLEKWNNGLNFSLSSSIISNTLEKYVSMKQNIFNKLNKMEENYISSITHCKEELLE
AVGLLSNYIQILSPLYSSTKKSHILITALDILNKLSNDLTIDNCIKSRNILSDLYHFNQE
NVDQVQRVIDALNNSWLNAAKTMIHIELDTNNYDNLIKDFKNDPLYGSEIIYNSLVRFIS
GTMKIMNDFKNEDDLTHLDEIIVRHNVLCNVDQIGVDISSLGDIGAIKNTKLLLNSINTF
KSTTLLSIFFEQCHIFLKDRHAIIDLHKEVESILQESKLETLLDRLRGNEEASMQEGFDA
ESRFNEYIQIISDKSKYTSQSYGLFVSVNSSLVQIEKFYPCGSNRRMKMICFIERIHGIY
QYLSLCIRYSEGFAGDSAEIPSFQAVFSCMNSFFKNIITNYFDIIGLLSLENLKEHLFSR
ITHEDDSSISDMEESNQLQKVFVALEAHMKHFHTQQRVKAKHDIVKSCNDQLISFQWFHE
NYIDENVSHVKSDLFNLKKYMKTLPLKYNKFSRVSKEYEELQKLQDSIANPELRQELKKY
SKAYDKRAESINSLSYVYKSVISALNAIHLNESLRNWKSEESIEMKTNLFNLLDDCHNLR
KSKDKLQGVASQEIKLYSMNEPVNEIDLEWIKATSLIVSDKVKKVQSELVESNEKLCCTQ
SILEEAQGMFRETFAIHQRLMTDVSVLLQSLSESEDYEIPRVKSYVLTYKEFSSLVSQIA
EKCVINESSVEKIIKTIAHLKSCTSVIYDELISLAEVLNDENISFYKIKKDVVLESSFQD
KKGEEEKNAFAINVLRRVRSKLEGKEPDPLCQVSVPDQVDFFIKEAISVDNLSHMYEGWA
PWI
NT seq
9012 nt
NT seq
+upstream
nt +downstream
nt
atgaatagaagcggttactattctggaaagaagatggaagttgaaattcctcgaatcacg
tctcggaattttaaatcctattatccccaggagtttctggagaactatttgggagatcag
cggatagcaacgctgcaactacgactgagccatgagagccttgtggacgtatgccttgtg
tatgcgtgtcagatcacgtgttccataatgtaccacagcaacaagacttatgtccggcag
aactatcacagcatcatggacaaaatggccatgatttttcaaagcaacaaaagtgaggat
gtgaagcgagagactgtgacaggcctggttcgaatcggggaaattgtgaggctaaattca
agtcataacgcagaaaacttttataaattcttgatcaatggtatgagcaattccacgagt
ggaacttattacattttagcattgaatgaaactctcaaagtgagaaacatggatgaaaag
cagctcaacggtatgattgaggatatcaaagtagaattggaaaagactgagtcttcgtcc
aaaacagtggacttggtagagcttttaagaaccgtttccatttatgaaacaaaagtattt
gtctataattttgttgacattattgatatcctcgtgggatgtttgatcgaccataataag
tcaacactcttgtcctatactataacaaaaacgtttattcaatggagttcatattgggac
atgaatctggcctttagtatttcccttcttcaatcttttactgaagatttggaagaattg
acagaggatatagtcaacgctcaaagtgaacaaagctctcagaaatatatgaaaaacata
attaacttactacaaatttttaatacaatactatcttgcattcatgtcatcaacggtgtt
gtttgtagtaatcttgacgcttggattgatattatttataaatgtcttgaaagtacgctc
tccaaatattttaatgaaaccttgcttatttgtggtcaaaggacttttttgattttgctg
aaggaagaaggtacttttaaagcaaagtatgagactcaaatcttccgactcatacaagcc
ttcactcttcataattttgatggactaacgtttcgaggaaaggatttttctctcaagttc
ataggaaaagtattcaaatattcgaatagttctcaacaggcgacaatagttaaaagtgtt
ttaaatgtggaatcactcgtacatgtgatattttcactcgataagcaattgaaaatgagt
tttattaattttttttcaatattactgaattcaaagagtgtgcttcttatccaagatatt
tattcctaccttgtcaattttttacatcaaagcttaaatgactcaaatccaaagtatagc
taccggcaggggaataccttaattcttcatatactaggaagtttttgcaatcttatttct
tccaatggaagtgttattagtaagtgggccctggatccacctatttttactgttctttgt
gcagaaaataaagtagcggatccttctttcattatgagagaacccatgcgacatctaata
ttgttgagagcgttacatgcacattgtcatcttaaagataactttattcgaacctcttgt
attaacgctgtattagtcgcgccctctttctcttcaacgttttatgggaaaattttggaa
atactgagaaaattatttgactacaactatggaacaagatatttgtatcttagaatttct
acttggattgagcgtacttttaatacacatccagaagtctacaccaccaattccactcta
ttttcttcccttatagattctgttttaagatttgtttataatcaccataatccaaaaatt
ataagaaagtgtctgaaacctctaatatcattaatcaatagcaatgcctgcacacaagaa
cagattgattatgcttacaaaattatatgtattcacatttctaataaggatgaacagatt
cgagagctttgtcatgtcttgcattccaaaataataccatctacaacgtgttcaaattca
attgagcttcataaagataagttaattaagaatctttttctctctcgtttcatgggacaa
gtgaatcatattgactttagacaccttattcaacatttatttaaaacagtcaatgatgat
aacaaatcctttaataataatcgggttctgcgtcgaaattttactgattcgaataaagga
aaagatacttttattaaagaaagtgcgctctataatgaggaattgtataatttttggaat
gcttgtgagatatcatggtttgctatcgctaacaagctcaaaactcctttaggcaaagca
caggatttattaacgaccatagaaaaacagattcgtttgcaggtacaatccccgaatgta
tcgttatctcattctttgctaggtttctttgacatttttgaacgaatgttgattaattca
tgtcgtggaggatctgcatttcattgtaaaatcccctccaaaaccgcttcttcgtttttt
tcggcgaatgaaaagacatgtacagattggataaagagattaaggcctagcttagtcgct
cttgcttctaaagtcaatgcatatgactttgttattcgacaatgtaatgaggctttatcg
ttagaatactcttcagataatatttcggatcaagagaatatgcttattcactttagtatc
gctctattcaagaagggtttatcatatgatctcaagggtctttattcgtggtgtaaaaag
aatacaaagatagatggaagatggattttagctttgactgatttgaccaattacaaaata
gaatcacttacaaaattattaaaaaatcataaaaatatcgatccaatgattcaacaagtc
atacacgatgaagttagttttgggcagtatcaaaatcaaataaaaaactactattctcaa
acagaggggacgtatgttggcagtcaagagtcatgggaaagtctttgtcagtcctttgat
aaatatactttgacaccacaagaggatcctcttgcgttgactaaatctaattcggaacca
aggttattgatagttcaagcacataataaattaattgaggctgcaagaatttatatggag
cattcgcattttgatatagattattgcaataaactctctgatgtgaaaacatccattaaa
aaactctgtcagatgaatttgcattcccgttttgactgtgaaatgcttatattactaaag
ttagtattacgtgaatttaatccaggaagtgattttgagttaagttttcttcatgacata
tataaatgggaggattctctctcactaaaaatattagttgcattgaaagactgggcagac
ttatttattcgaagaaatggtcgttatcctccaaatattattgaaaaggcggagtcgtta
acttttaaaattgtcaataggtctagagatgctcagaattttccgctagcattggaatat
ttggatagtcttcttgggaatggaagtcatgatgtactagaatatgctagatgttttaat
ttcagtgagtccttcataagtatcaaacaggtgcgatgctttcaagaagtcgctattttg
gctgattcattggataaaaaagaattatcttgcaatctcttgaccggaacaataatgaat
attttaaagtcccaaagcaatgaaaattttgaagttagcaagttagttgcagatttaatg
catgatcttgctatattcaagaagatatcactaaaagatggagaaactgtatcaggacaa
tatagtataagtgatatattgattttagggaatcatttcattagctcatcagtttgtgaa
ttaataccctataatagtgttaatccaaattgtatggagataggctttcttttaaaaaat
tcagttagtttaagtccagatgtagcaaaatactggggatcatttgctgattgggctttc
gaattaggtgaacaaattttgcagaatgaagttacatcatccattaaagactctgaaaag
gaagcattaaataattttgatttagctcaggatgtctttgataaaatatgctcgttgttt
tccaatccaaagcttcaaaccaaattagctaaggatatgacaaaactagaattcatggaa
gatcaagtgaaggagctatgtggggatgatatttctaatttacaaaacattcttgagatt
tggttaactatacaaaagcggatgtatttttattttgagcttagtctgttttcgtacttt
caacaaatatccctctcaacgtgtgaagataaagttattccagccacattacgtatactt
catatgattgttaaatattcgcttgaacttgaagaacctctcgagaagggtctctctgtg
actccctgccgacaatggatcccaatcataccacaattattttctcgactaaaccatcca
ataaaactggtaagaaacaaactcattgaactacttagtcggctagcgaaagaaaatgca
cagtccatcatttatcccgcaattgtcgggtctctaacaaagggtaagctctccaatatt
gtcgatttacaagaagatgaagatggaagtccaaaaaaaaacgaaaactctgacaagtca
atgcaaagtgcttatattcaaatcgtcaataatgtacgtgcagaatgttccatgtatgaa
gttgatgaaatcgtagctctagtttttgagcttcagaggatttctcttctttgggatgaa
ctttggagtgctactttacagcaatatagtaatgatattaatcaaagagctaaaaagttg
gagaaggagatagttaagttaaggcagaatgatgcccttcaaggaaaagaaattaaaaga
ctcatatttgaaaagttcaatatcattttcaaacctttgttatttgttttagaaaagatt
gttaaaatcacttctgtgccagaaacacaaaatgaaatcaacttttctaaaaaataccaa
gaacatattaataatctcatagattccttgagaaatcctactgatccttttactccggtt
aatttattgaaacaattgcagggtaaactttcaaataaattatacagacatcattgtctg
tccttacgagagttgtcctctgtactagccaactttaaaaacgtaaagattcctatgcca
ggtgttgttagtcacaaaaatgttactattaattcatttcatagaattcttactactctt
gctacaaagaccaagccgaaaaagctttggattcttggaagtgatggaaagcgctatggg
tatcttttaaaaggcttagaagatctacatttagatgagaggataatgcaatttctaacc
attaccaatgatatgacaaaccataatggctataaagctcggacttatgccgttgttcct
ctaggaatccgatcaggtttgattcaatgggttaaaaaggctatccctgtattttctttg
tacaaaaagtggcaacagaagaagttgaatagcaatgacgagaaacagaagaacaatctt
caaaatccctctgacttatactattctaaattatttcctttacttcgagaaaaaggaata
aataatttagactctaggaaaaagtggccggactctgttttaagggatgtgatggaatct
cttatatctgaaacacccaatgatttaattgcaagtgaaatttattttgcgtcctatagt
tccaaagactggtatcataaaataaataatctaactaaaagcattgcaataatgtcaacg
attggctacattattggtttgggggatcggcatcttgataaccttcttatagactttgcc
gcaggggagataatccatatagactataatgtttgtttcgagaaaggaaaaaatctcatt
atccccgaaagggttccctgtagactgactcagaatattgttaaaatctttggtgttccg
ggtgttcaaggagcatttaaatattcttgtgaggatgttctcaaatcattacgtggtggc
tgtgatactttaataaatttattggaagcatttgtttacgaccctttagttgattggact
ccaggcgtagatactttactagctcaaaacgtgaatgacttaaaacataaaaaggattta
cagacggagataatgttcagtatgtattgtgttcgcatcacagaaattgagtctgcatgg
ttcgacaataagtattccttcattgattacctatcgaaaatggagaattctctagatcaa
tggttagaaactgatggaaatcaaaagacattgaatcaagatttgtctgacatgcatgtt
tgcatgtctctactaaaggatgctgaatcgaatccacgtcataaattatttttttctaag
agtaattataaagaattcagggattctaaacaatttgaagctcttgtagttgaaaaaatt
gaaaacatgttagctgatattgagaatcagtataatcttattaaaaggacatactcggtt
atgtgtccttcccagttggaaaagtggaataatggtttgaattttagtctttcctcatca
ataatctcaaacaccttagagaaatatgtttctatgaagcaaaatatttttaataagcta
aataaaatggaggaaaactatatttcctccatcacacattgtaaagaagagcttttggag
gcagttgggctattgagtaattatattcaaatattgtctcctctgtattcttccacaaag
aaaagtcatatactgataactgctttggacattctaaataagttatcaaacgacctcacc
atagataattgtatcaagtcgagaaatatattatctgatttgtatcattttaatcaagaa
aatgtagatcaagtgcaaagagttattgatgccttgaataattcgtggttaaacgccgct
aaaacaatgattcacatagaactggatacaaataattacgataatttaattaaagatttc
aaaaatgatccactttacggatcagaaataatttataattcccttgtcagatttatatct
ggaacaatgaaaattatgaatgatttcaaaaatgaagatgacttaactcatttggatgaa
atcatagttcgtcacaatgtactatgtaatgtggatcaaattggtgttgacatttccagc
cttggagatattggtgcaataaaaaatacaaagttgcttttaaatagtattaatactttt
aaatcaacaaccttgttgtcaattttctttgaacagtgccatatatttctcaaagatagg
catgctattattgatttacacaaggaagtggagagtatcttacaggagagtaaattggag
acgttgttggatcgacttcgaggaaacgaagaggccagtatgcaagaaggatttgatgca
gagagtagatttaatgaatatattcagatcatttccgacaaaagcaaatatacgtcccag
agttatggtctttttgtgagcgttaattcgagtcttgttcaaattgaaaagttttatcct
tgtggtagtaacagaaggatgaaaatgatttgcttcatcgagaggattcacggtatctac
cagtatttatccttatgtatacgatattcggaaggttttgctggagacagtgcagagatt
ccgtctttccaagctgttttctcatgtatgaactcattcttcaaaaatataattaccaat
tattttgatattattggactactctcactggagaatctcaaagagcatttattctctaga
ataacgcatgaggatgattcctccataagtgatatggaggaatctaatcaactacagaaa
gtatttgttgctttggaggctcatatgaaacattttcatacacaacaaagagtcaaagca
aaacatgacattgtcaagagctgcaatgatcaacttatttcctttcaatggtttcatgaa
aactacattgatgagaatgttagtcacgtaaaaagcgatttatttaatttaaaaaagtac
atgaaaaccttaccattgaaatacaacaaattttctcgtgttagcaaagaatacgaagaa
ctccaaaagctacaagacagtatagcaaacccagaattgcgccaagaactgaaaaaatat
tccaaggcatatgataaaagagcagagtctatcaattccttgtcttatgtttataagagt
gttatatctgccctgaatgccattcatcttaatgaatctcttcgcaattggaagtccgaa
gaatcaattgagatgaaaactaatttattcaatttgcttgatgactgtcacaatttacgt
aaatccaaagataaactccaaggagttgcttctcaagaaataaaactttattccatgaac
gagcctgtgaatgaaattgatttagagtggatcaaagccacttccttgattgtaagtgat
aaagtgaagaaagttcaatccgagttagtagaatcgaacgaaaaactttgttgcactcag
tctattttggaagaggctcaaggaatgttcagggaaacatttgcgatacatcaacgttta
atgactgatgtaagcgttttacttcaatctctgagtgaaagcgaggattatgaaataccc
cgagtaaagtcctatgttttgacctacaaggaattttctagcttggtttctcaaatcgca
gagaaatgcgtcattaatgaatcctcggttgaaaagattattaagacaattgctcatctg
aaaagttgcacctcggtcatttatgatgaactgatatctcttgcagaggttttaaatgat
gaaaacattagtttttacaagatcaaaaaggatgtggttctggaaagctcattccaggac
aagaaaggagaggaagagaagaacgcctttgctattaatgttttacgccgagtaagatcc
aagcttgagggaaaagagccggatcctctatgccaagtctcagttcctgatcaagtagat
ttttttatcaaagaagctatatcagtagataatttatcgcatatgtatgaaggctgggct
ccttggatctaa
DBGET
integrated database retrieval system
