Lepeophtheirus salmonis (salmon louse): 121132545
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Entry
121132545 CDS
T08214
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121132545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsm03019
]
121132545
03012 Translation factors [BR:
lsm03012
]
121132545
Enzymes [BR:
lsm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121132545
Messenger RNA biogenesis [BR:
lsm03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
121132545
Translation factors [BR:
lsm03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
121132545
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
HA2_C
DEAD
OB_NTP_bind
nSTAND3
HA2_N
AAA_22
ATPase
AAA_19
PhoH
ABC_tran
ATPase_2
TsaE
Motif
Other DBs
NCBI-GeneID:
121132545
NCBI-ProteinID:
XP_040583903
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All DBs
Position
2:complement(5841539..5844812)
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AA seq
925 aa
AA seq
DB search
MERRGRHPEGLRGRDIGLYYAKKNKEKGGIQLDEIVLSNEVRQKIEDWRKKHGSSGRSAP
KMNTEFHDRYNAHLKKSQYVVDNWGEDSDAEEEQVEEEEEEGEEEEEEFPVSKRCPKTDE
SLLEKQMDEKENPSSELKDIFHFRELLPAWTKKENILEMIEKNQVVVISGETGCGKTTQV
PQFILDHSIAKGEGSLTNIICTQPRRISAVSVAERVAYERGEHSCGNSVGYQIRLESKLP
RSKGSIIFCTTGIPLQWMRRNPLLNGISHIILDEIHERDILSDFLITLLKDILIQRKDLK
VILMSATLNAQQFARYFDGCPIVEIPGRIFPVEEHFLEDVLEMTNFPISYSVEYSGSYKK
RQNTAKKANRENGEYIRLFSQFLRNIEPKFSDSTMESLSTCQSEQFNPELIANLVQYIHT
KKPEGAILIFLSGWNEISKVHELFTGDSEYSRINGLRIHPLHSLMPTVNQKEIFERPPKN
IRKVILATNIAETSITIDDIVYVIDSGKIKIKDFDKEMDVDTLKPRWISLANARQRKGRA
GRVKPGICYRLYSSYRESTFESYLKPEILRTRLDEVILNIKVLGLGPAASFLAKMMESPN
PESVEHAISFLQNIRALQNNEELTHLGFHLAELPMSPQTGKMVLLGAIFSCLDPVLSIAA
SLNFKDPFIVPLGQDFLAKKKKNALSKGSNSDHLTLSNVMAEWDRVYDRGQFCWKNYLSK
SNVKMLDNLKCQFAEYLYEKKFIKSKNVKDKDANINSENLDLIRSIVAAGLYPNVAKITK
QKGPMSVMCTSKIRRISFHSKSVLSTHFSDPSRWIVYNLMLKGESSTSILDGTVVPSLAL
ALWGKEKDTSNEGQLIFDNILRFSLSHSDMNDLMTVKRALNQFIEDRMSHPVPVDWNNTT
SFEGSLLKLLLHLMMDPYCRTARYS
NT seq
2778 nt
NT seq
+upstream
nt +downstream
nt
atggagcgccgtggtcgccatcccgaagggctccgtggcagagatattggactctactac
gctaagaagaataaagagaaaggaggaatacaattagatgagatcgtcctttctaatgag
gttaggcagaagatcgaagattggagaaagaaacatggatcctcgggtaggagtgctcct
aagatgaacacagaatttcatgatcgctacaatgcgcacctaaagaaaagccaatatgtg
gtggacaactggggagaggactcggatgccgaagaggagcaagttgaggaagaggaagaa
gaaggagaggaagaagaggaagagttccccgtctccaagcgttgtcccaaaacagatgaa
tctctcctggaaaagcaaatggatgaaaaagagaatccctcatccgaattaaaagacatt
ttccacttccgagagctgttgccagcctggactaaaaaagagaatatcctagaaatgatt
gaaaagaatcaagtggtggtgatttctggagaaacaggctgcggaaaaacgacgcaagtt
cctcagttcattctggaccattccatagccaaaggtgaaggctctttgactaatataatt
tgtactcaaccacgtcgaatctctgctgtttctgttgctgaacgtgtggcatacgaaagg
ggagaacattcttgtgggaactcagttggataccaaatccgtctcgaaagtaaattgcct
agatcaaaaggctcaattattttttgtactacagggattcctcttcagtggatgaggcgc
aacccacttttgaatgggatttctcatataatactggatgaaatccatgaaagggacatc
ctatcggatttcttgattactttgttaaaagacattcttattcaaaggaaggacttgaaa
gtaattttaatgtctgctacgcttaacgctcaacaatttgcaagatattttgatggttgt
cctattgttgaaattccaggacggatttttcctgtcgaagaacactttttggaagatgtt
ttggaaatgacaaatttcccaatttcgtattcagttgagtattctggttcttacaaaaaa
cgacagaatactgctaagaaagcgaatcgagaaaatggtgagtatatacgtttgttctca
caattccttaggaatattgagcctaaattttccgattcaaccatggagagtttgtctacc
tgtcagtccgaacagtttaatcctgagttaattgccaatttagttcagtacattcacact
aaaaagcctgaaggagcgattcttatatttttgtcagggtggaatgagatatctaaagtc
catgaattattcacgggtgactcagaatattcacgcatcaatggacttcgtattcatcca
cttcactctctcatgcctacagttaaccaaaaagaaatatttgaaagaccaccgaaaaat
attcgaaaagttatccttgctacaaatattgctgaaacttctataacaatagatgatatt
gtatacgtaattgattctggaaaaatcaaaattaaagacttcgataaagaaatggatgta
gatactcttaaacctcgttggatttccttagcgaatgctcggcaaagaaagggaagagct
ggcagagttaaacctggcatttgttatcgactatatagctcatatcgtgaatctacgttt
gaatcatatttgaaacctgaaattctacgaacccgcctcgatgaagtcattttaaatatt
aaagtgttaggacttggtccggctgcttccttcttagcaaaaatgatggagtcgcctaac
cctgaatcagttgagcatgccattagttttttacagaatataagggctctgcaaaataat
gaggaattaacccatttaggttttcatttagcagaacttcctatgagtccccaaactgga
aaaatggtccttctaggggcaatattttcatgcctagatcctgtattatcaattgcagcc
tctttaaatttcaaggatccttttatagttcctcttggacaagactttcttgccaaaaaa
aagaagaatgctctgtcgaaaggatctaattcagatcatttgacattatccaatgtaatg
gcagaatgggatcgtgtttatgatagaggccaattctgttggaagaactatttatctaaa
tccaatgtaaaaatgcttgataatttaaaatgccaatttgccgaatatctttatgagaaa
aagtttattaaatcaaaaaacgttaaagacaaagatgccaatataaattcggaaaattta
gatcttattcggtctattgtagcagccggactctaccctaatgttgcaaagataaccaaa
caaaagggtcccatgtctgtcatgtgtacttcaaaaatcaggcgcatttcgtttcattca
aaatcagtattatccactcacttcagtgatccatctcgatggattgtctataatctcatg
ttgaaaggagagtcatccacaagtatattggatggaactgttgttccatctttagcttta
gcattatgggggaaggaaaaggatacatctaacgaaggtcagctcatatttgataatatt
ttaagattcagtctttcacattctgatatgaatgatttgatgacggtcaagcgtgcttta
aatcaatttatagaagatcgaatgagtcatccggtaccagttgattggaataatactact
tcttttgagggatcgctgctaaagctacttttacatttgatgatggatccttattgcagg
actgctagatactcatga
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